1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. K562

Experiment summary for ENCSR000EGM

doi:10.17989/ENCSR000EGM

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens K562
Biosample Type
cell line
Replication type
isogenic
Description
CTCF ChIP-seq on human K562 produced by the Snyder lab
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Michael Snyder, Stanford
Award
U54HG004558 (Michael Snyder, Stanford)
Project
ENCODE
Date submitted
May 14, 2012
Date released
May 14, 2012
Reference Epigenome
ENCSR612NLL 
Annotation (gkmsvm-model)
Annotation (physical modeling)
Annotation (BPNet-model)
Submitter comment
Processing cannot be completed on the GRCh38 assembly at this time due to a failure in peak calling.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens K562 cell lineENCBS039ENCENCAB000AFQENCLB209AIN
21Homo sapiens K562 cell lineENCBS039ENCENCAB000AFQENCLB209AVT

Files

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Replicates

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