Summary for ENCSR612NLL
doi:10.17989/ENCSR612NLL
Supersedes ENCSR532GIR
Summary
- Status
- released
- Description
- Reference epigenome for human K562 cell line
- Donor diversity
- single
- Assay
- polyA plus RNA-seq, RNA-seq, ChIP-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, microRNA-seq, DNase-seq, ATAC-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, EP300, POLR2A, H3K4me3, CTCF
- Biosample summary
- Homo sapiens K562
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR612NLL
Experiments
17 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000AEP | polyA plus RNA-seq | Homo sapiens K562 | Barbara Wold, Caltech | released | ||
| ENCSR000AES | small RNA-seq | Homo sapiens K562 | Thomas Gingeras, CSHL | released | ||
| ENCSR000AKP | ChIP-seq | H3K27ac | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000AKS | ChIP-seq | H3K4me1 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000APE | ChIP-seq | H3K9me3 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000BKR | ChIP-seq | POLR2AphosphoS5 | Homo sapiens K562 | Richard Myers, HAIB | released | |
| ENCSR000DWB | ChIP-seq | H3K36me3 | Homo sapiens K562 | John Stamatoyannopoulos, UW | released | |
| ENCSR000EGE | ChIP-seq | EP300 | Homo sapiens K562 | Michael Snyder, Stanford | released | |
| ENCSR000EGM | ChIP-seq | CTCF | Homo sapiens K562 | Michael Snyder, Stanford | released | |
| ENCSR000EOT | DNase-seq | Homo sapiens K562 | John Stamatoyannopoulos, UW | released | ||
| ENCSR000EWB | ChIP-seq | H3K27me3 | Homo sapiens K562 | Peggy Farnham, USC | released | |
| ENCSR109IQO | RNA-seq | Homo sapiens K562 | Brenton Graveley, UConn | released | ||
| ENCSR388QZF | ChIP-seq | POLR2A | Homo sapiens K562 | Michael Snyder, Stanford | released | |
| ENCSR569QVM | microRNA-seq | Homo sapiens K562 | Ali Mortazavi, UCI | released | ||
| ENCSR668LDD | ChIP-seq | H3K4me3 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR765JPC | whole-genome shotgun bisulfite sequencing | Homo sapiens K562 | Richard Myers, HAIB | released | ||
| ENCSR868FGK | ATAC-seq | Homo sapiens K562 | Michael Snyder, Stanford | released |
Control experiments
6 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000AKY | input library | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000BLJ | input library | Homo sapiens K562 | Richard Myers, HAIB | released | |
| ENCSR000DWA | input library | Homo sapiens K562 | John Stamatoyannopoulos, UW | released | |
| ENCSR000EHI | IgG | Homo sapiens K562 | Michael Snyder, Stanford | released | |
| ENCSR000EWK | input library | Homo sapiens K562 | Peggy Farnham, USC | released | |
| ENCSR173USI | input library | Homo sapiens K562 | Michael Snyder, Stanford | released |