1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. bronchial epithelial cell

Experiment summary for ENCSR000DXI

doi:10.17989/ENCSR000DXI

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens bronchial epithelial cell
Biosample Type
primary cell
Replication type
isogenic
Description
CTCF ChIP-seq on human SAEC
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG004592 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date submitted
March 17, 2011
Date released
March 17, 2011
Reference Epigenome
ENCSR127YEN 
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
Cross-correlation metrics are too poor to permit further analysis. Replicate 1,1 of this experiment was previously attributed to biosample ENCBS417ENC and replicate 2,1 of this experiment was previously attributed to biosample ENCBS417ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens bronchial epithelial primary cellENCBS768ZLUENCAB000AFPENCLB624RWD
21Homo sapiens bronchial epithelial primary cellENCBS838JFPENCAB000AFPENCLB828TFE

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