Experiment summary for ENCSR000BQE
doi:10.17989/ENCSR000BQE
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CTCF
- Biosample summary
- Homo sapiens Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- CTCF ChIP-seq (protocol v041610.2) on ECC-1 treated with dimethylsulfoxide at 0.02%. Note- This experiment previously referred to its biosample as ECC-1, however it has been found that all currently available ECC-1 are actually Ishikawa cells.
- Treatments
- 0.02 percent dimethyl sulfoxide (CHEBI:28262) for 1 hour
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
ENCODE2 project
- Lab
- Richard Myers, HAIB
- Award
- U54HG004576 (Richard Myers, HAIB)
- Project
- ENCODE
- External resources
- References
- Date submitted
- January 23, 2012
- Date released
- February 29, 2012
- Annotation (BPNet-model)
- Tags
- Registry of cCREs
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens Ishikawa cell line treated with 0.02% dimethyl sulfoxide for 1 hour | ENCBS312UTV | ENCAB000AFR | ENCLB559JDP |
| 1 | 1 | Homo sapiens Ishikawa cell line treated with 0.02% dimethyl sulfoxide for 1 hour | ENCBS312UTV | ENCAB000AFR | ENCLB559JDQ |