Experiment summary for ENCSR000BQE

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour
Biosample Type
cell line
Replication type
isogenic
Description
CTCF ChIP-seq (protocol v041610.2) on ECC-1 treated with dimethylsulfoxide at 0.02%. Note- This experiment previously referred to its biosample as ECC-1, however it has been found that all currently available ECC-1 are actually Ishikawa cells.
Treatments
0.02 percent dimethyl sulfoxide (CHEBI:28262) for 1 hour
Nucleic acid type
DNA
Lysis method
see document
Extraction method
see document
Fragmentation methods
see document
Size selection method
see document
Strand specificity
Non-strand-specific
Controls

Attribution

ENCODE2 project
Lab
Richard Myers, HAIB
Award
U54HG004576 (Richard Myers, HAIB)
Project
ENCODE
Date submitted
January 23, 2012
Date released
February 29, 2012
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv4

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21Ishikawa cell line treated with 0.02% dimethyl sulfoxide for 1 hourENCBS312UTVENCAB000AFRENCLB559JDP
11Ishikawa cell line treated with 0.02% dimethyl sulfoxide for 1 hourENCBS312UTVENCAB000AFRENCLB559JDQ