Experiment summary for ENCSR000BLX

doi:10.17989/ENCSR000BLX

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours
Biosample Type
cell line
Replication type
isogenic
Description
Control ChIP-seq (protocol v041610.2) on SK-N-SH treated with 6uM retinoic acid for 48 hours
Treatments
6 μM all-trans-retinoic acid (CHEBI:15367) for 48 hours
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Richard Myers, HAIB
Award
U54HG004576 (Richard Myers, HAIB)
Project
ENCODE
Date submitted
July 18, 2011
Date released
July 18, 2011
Reference Epigenome
ENCSR192FFL 
Annotation (BPNet-model)
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hoursENCBS404ENCENCAB000AXUENCLB559JHX
21Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hoursENCBS404ENCENCAB000AXUENCLB559JHW