Experiment summary for ENCSR000AHD
doi:10.17989/ENCSR000AHD
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CTCF
- Biosample summary
- Homo sapiens MCF-7
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- HAIB ChIP CTCF in MCF-7
- Nucleic acid type
- DNA
- Size range
- 100-300
- Fragmentation methods
- sonication (Bioruptor Twin)
- Size selection method
- SPRI beads AMPURE
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
ENCODE2 project
- Lab
- Richard Myers, HAIB
- Award
- U54HG004576 (Richard Myers, HAIB)
- Project
- ENCODE
- External resources
- Date submitted
- January 23, 2012
- Date released
- September 10, 2012
- Annotation (gkmsvm-model)
- Annotation (physical modeling)
- Annotation (BPNet-model)
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
---|---|---|---|---|---|
1 | 1 | Homo sapiens MCF-7 cell line | ENCBS000AAA | ENCAB000AFR | ENCLB305ZZZ |
2 | 1 | Homo sapiens MCF-7 cell line | ENCBS001AAA | ENCAB000AFR | ENCLB306ZZZ |