- TF ChIP-seq4030
- Histone ChIP-seq3180
- Control ChIP-seq2394
- scRNA-seq1070
- DNase-seq837
- polyA plus RNA-seq782
- total RNA-seq704
- shRNA RNA-seq628
- DNAme array257
- Control eCLIP234
- eCLIP225
- microRNA-seq221
- small RNA-seq214
- ATAC-seq206
- WGBS201
- RNA microarray170
- RAMPAGE168
- RNA Bind-n-Seq158
- genotyping array123
- CAGE120
- microRNA counts115
- siRNA RNA-seq113
- Repli-seq104
- RRBS103
- CRISPRi RNA-seq77
- Hi-C75
- Control Mint-ChIP-seq72
- Mint-ChIP-seq63
- Repli-chip63
- ChIA-PET57
- CRISPR RNA-seq50
- PAS-seq47
- GM DNase-seq46
- RIP-seq45
- long read RNA-seq43
- FAIRE-seq37
- RIP-chip32
- polyA minus RNA-seq32
- RNA-PET31
- genotyping HTS18
- MS-MS14
- 5C13
- WGS10
- snATAC-seq8
- DNA-PET6
- icSHAPE6
- MRE-seq4
- MeDIP-seq4
- iCLIP3
- 5' RLM RACE2
Selected filters:
released
- H3K4me3539
- H3K4me1455
- H3K36me3436
- H3K27ac422
- H3K27me3410
- H3K9me3394
- CTCF357
- H3K9ac176
- POLR2A144
- H3K4me2134
- RAD2172
- EP30064
- H3K79me255
- H2AFZ51
- POLR2AphosphoS548
- H4K20me142
- JUN32
- REST31
- CEBPB30
- NR3C130
- EZH227
- MAX26
- MYC24
- SMC322
- JUND20
- FOSL219
- YY118
- GATA117
- H3K9me217
- JUNB17
- USF117
- GABPA16
- H3F3A16
- SIN3A16
- TAF116
- CREB115
- ELF115
- EZH2phosphoT48715
- MAZ15
- ATF314
- BCL314
- MAFK14
- NRF114
- SP114
- TARDBP14
- TCF1214
- USF214
- ZBTB3314
- FOXA113
- RELA13
- whole organism2464
- K5621713
- HepG21208
- forelimb1056
- A549486
- GM12878339
- MCF-7262
- HEK293246
- liver234
- stomach193
- H1190
- heart176
- cell-free sample158
- HeLa-S3152
- SK-N-SH148
- lung132
- forebrain125
- spleen121
- kidney118
- midbrain117
- adrenal gland116
- hindbrain115
- sigmoid colon103
- IMR-9096
- transverse colon95
- macrophage92
- limb90
- foreskin keratinocyte89
- MEL86
- embryonic facial prominence85
- upper lobe of left lung79
- S278
- neural tube75
- gastrocnemius medialis71
- thyroid gland69
- HCT11668
- endothelial cell of umbilical vein67
- CH12.LX66
- dendritic cell66
- esophagus muscularis mucosa66
- heart left ventricle64
- small intestine64
- gastroesophageal sphincter63
- tibial nerve63
- body of pancreas62
- esophagus squamous epithelium61
- brain60
- intestine58
- keratinocyte58
- testis58
- epithelium2990
- blood2931
- bodily fluid2931
- exocrine gland1925
- endocrine gland1752
- liver1510
- limb1455
- embryo1013
- brain1000
- lung967
- connective tissue659
- musculature of body599
- intestine590
- skin of body568
- kidney551
- mammary gland399
- large intestine380
- heart371
- bone element328
- colon323
- bone marrow299
- stomach277
- immune organ273
- extraembryonic component270
- vasculature260
- blood vessel238
- uterus236
- spleen219
- penis216
- placenta202
- pancreas163
- esophagus155
- gonad142
- arterial blood vessel138
- prostate gland122
- adrenal gland116
- adipose tissue113
- lymph node110
- small intestine95
- spinal cord88
- testis76
- breast73
- vein72
- thyroid gland70
- eye69
- nerve65
- lymphoid tissue63
- ovary63
- thymus55
- vagina35
- cancer cell4826
- hematopoietic cell3278
- leukocyte3113
- epithelial cell2729
- B cell772
- stem cell696
- embryonic cell492
- connective tissue cell481
- fibroblast466
- T cell321
- myeloid cell227
- neural cell189
- neuroblastoma cell171
- keratinocyte149
- progenitor cell130
- endothelial cell120
- induced pluripotent stem cell112
- myoblast66
- monocyte49
- cardiocyte48
- smooth muscle cell42
- melanocyte39
- pericyte8
- lymphoblast6
- adult6867
- embryonic5020
- unknown1669
- child1664
- newborn301
- postnatal244
- L1 larva191
- young adult173
- L4 larva148
- prepupa139
- late embryonic134
- wandering third instar larva118
- L3 larva102
- L2 larva100
- mixed stage (embryonic)72
- third instar larva66
- pupa38
- early embryonic24
- L4/young adult6
- larva5
- midembryonic4
- second instar larva4
- first instar larva3
- dauer2
- dexamethasone291
- lipopolysaccharide69
- ethanol55
- calcium52
- all-trans-retinoic acid51
- dimethyl sulfoxide40
- 17β-estradiol38
- doxycycline hyclate33
- copper(II) sulfate32
- Activin A24
- Bone morphogenetic protein 424
- Fibroblast growth factor 224
- tumor necrosis factor20
- interferon alpha19
- Interferon gamma18
- 20-hydroxyecdysone16
- afimoxifene16
- phorbol 13-acetate 12-myristate15
- ionomycin14
- lipoprotein A13
- erythropoietin9
- hydrocortisone succinate9
- interleukin-39
- kit ligand9
- estradiol8
- forskolin8
- pyruvate8
- darkness6
- indole-3-acetic acid6
- 17β-hydroxy-17-methylestra-4,9,11-trien-3-one5
- G-CSF5
- MEDII4
- Sindbis virus4
- bisphenol A4
- cadmium dichloride4
- genistein4
- pravastatin4
- 17β-hydroxy-5α-androstan-3-one3
- Interleukin-43
- NAI-N33
- UT1893
- anti-CD1803
- caffeine3
- lactate3
- rotenone3
- sodium butyrate3
- zinc dichloride3
- 22-hydroxycholesterol2
- cold shock treatment2
- insulin2
- mimosine2
- paraquat2
- retinoic acid2
- tamoxifen2
- thymidine2
- 2-Deoxy-D-glucose1
- CpG ODN1
- Sendai virus1
- cisplatin1
- doxycycline1
- flavopiridol1
- heat shock treatment1
- hydroxyurea1
- oligomycin1
- resveratrol1
- trichostatin A1
- vorinostat1
- fastq16411
- bam15224
- bigWig13806
- bed narrowPeak8310
- bigBed narrowPeak8303
- tsv3463
- bed broadPeak2435
- bigBed broadPeak1981
- tagAlign1270
- bed bed3+906
- tar579
- sra496
- bed idr_ranked_peak485
- gtf312
- bed bedRnaElements288
- bigBed bedRnaElements288
- bed bedMethyl283
- bigBed bedMethyl283
- idat275
- bed tss_peak235
- bigBed tss_peak235
- gff gff3235
- bed idr_peak134
- bigBed idr_peak134
- bed bed6+115
- bigBed bed6+115
- rcc115
- bed bedLogR64
- bigBed bedLogR63
- sam59
- wig59
- bed bed1243
- bigBed bed1243
- hic33
- bed bedGraph30
- bed bedExonScore27
- bigBed bedExonScore27
- csfasta24
- hdf520
- bed bed918
- bigBed bed918
- vcf17
- bigBed bed3+13
- csqual12
- bedpe9
- bed peptideMapping8
- bigBed peptideMapping8
- bed bed37
- bigBed bed37
- bed modPepMap6
- bed pepMap6
- bigBed modPepMap6
- bigBed pepMap6
- CEL4
- fasta3
- Illumina HiSeq 20006136
- Illumina HiSeq 25003957
- Illumina HiSeq 40002281
- Illumina Genome Analyzer IIx2227
- Illumina Genome Analyzer966
- Illumina NextSeq 500962
- Illumina Genome Analyzer II733
- Illumina NovaSeq 6000193
- Illumina Infinium Methylation EPIC BeadChip154
- Illumina Genome Analyzer I135
- Illumina Genome Analyzer IIe96
- Illumina HiSeq X Ten72
- Illumina - Methylation 450K BeadChip62
- Illumina Infinium Omni5Exome-4 Kit59
- nCounter Mouse V1.3 miRNA Expression array58
- Applied Biosystems SOLiD System 3 Plus49
- nCounter Human V2 miRNA Expression array38
- Nimbelgen - Human 3x720K Whole Genome CGH Tiling Array34
- Pacific Biosciences Sequel II23
- Pacific Biosciences Sequel21
- Mouse 385K Whole Genome CGH Tiling Array16
- nCounter Mouse V1.5 miRNA Expression array14
- Nimblegen - Human 6x630K CGH Whole Genome tiling array12
- Illumina HiSeq 10008
- Nimblegen - Human 2.1M Whole-Genome CGH Tiling Array v2.08
- Illumina MiSeq5
- nCounter Mouse V1.2 miRNA Expression array5
- Affymetrix - Human Exon 1.0 ST V2 tilling array4
- Mouse 3x720K Whole Genome CGH Tiling Array2
- Roche 454 Genome Sequencer FLX2
- Pacific Biosciences RS II1
- 185
- 20153
- 2581
- 2783
- 2858
- 291
- 30105
- 3149
- 32498
- 3344
- 3473
- 3542
- 364431
- 3777
- 387
- 3938
- 40201
- 4123
- 4215
- 43108
- 44102
- 45335
- 4660
- 472
- 4835
- 4915
- 504079
- 51387
- 522
- 531
- 55170
- 5610
- 58136
- 591
- 611
- 621
- 685
- 702
- 712
- 726
- 7426
- 75757
- 761902
- 7842
- 8027
- 822
- 8310
- 841
- 856
- 867
- 875
- 881
- 901
- 941
- 951
- 968
- 981
- 999
- 1002264
- 1011301
- 10811
- 1131
- 1172
- 12511
- 13040
- 1311
- 1323
- 1333
- 1362
- 1393
- 1491
- 15020
- 15187
- 1761
- 1911
- 2501
- 3002
- 4581
- >2002427
- 300-5001712
- 450-6501117
- 200-8001081
- 200-6001066
- 175-300459
- 150-350449
- 350-600335
- <30268
- <200214
- 250-450184
- 200-500168
- 20-20132
- 120-200128
- 200-40094
- 250-40092
- 300-60090
- 180-50084
- 200-75082
- 19-2566
- 150-25047
- 200-25046
- 300-100036
- 175-50035
- 350-45026
- 40-4026
- 200-700025
- 100-30024
- 100-35017
- 100-50017
- >17517
- 300-80016
- 150-40015
- 150-100013
- 240-42013
- 299-30011
- 50-30010
- 200-10009
- 150-1507
- 200-3005
- 150-3004
- 250-4304
- 300-3504
- 100-1003
- 175-2503
- 175-2753
- 200-2753
- 10-502
- 250-4702
- >10002
- 120-2801
- 125-2781
- 138-10001
- 149-5121
- 151-3471
- 151-3791
- 151-4991
- 153-3091
- 153-4991
- 156-3121
- 157-4971
- 159-1961
- 165-2031
- 169-2251
- 170-2021
- 172-14521
- 175-2251
- 186-7471
- 187-16061
- 200-15001
- 200-3251
- 200-4911
- 200-5941
- 200-6501
- 200-7121
- 200-7641
- 200-9001
- 208-4421
- 209-8911
- 210-4801
- 213-4511
- 215-10001
- 217-4751
- 221-10001
- 222-3181
- 225-3001
- 225-3501
- 232-10001
- 266-4701
- 268-4781
- 275-4701
- 280-5091
- 285-4771
- 287-4781
- 289-4811
- 2963-29631
- 300-7001
- 3062-30621
- 312-5061
- 312-5311
- 325-4251
- 325-4501
- 354-5981
- 354-6531
- 373-3731
- 400-4001
- 442-4421
- 471-5271
- 472-5581
- 482-5601
- 487-5711
- 555-6171
- 555-6781
- Michael Snyder, Stanford2543
- Bradley Bernstein, Broad2184
- Richard Myers, HAIB1671
- John Stamatoyannopoulos, UW1464
- Bing Ren, UCSD1327
- Kevin White, UChicago1250
- Barbara Wold, Caltech1236
- Brenton Graveley, UConn776
- Thomas Gingeras, CSHL728
- Gene Yeo, UCSD462
- Joseph Costello, UCSF404
- Valerie Reinke, Yale361
- Susan Celniker, LBNL356
- Ali Mortazavi, UCI311
- Tim Reddy, Duke298
- Robert Waterston, UW218
- Joe Ecker, Salk183
- Chris Burge, MIT158
- Gregory Crawford, Duke139
- Ross Hardison, PennState128
- Peggy Farnham, USC118
- Xiang-Dong Fu, UCSD94
- Alexander Hoffmann, UCLA92
- David Gilbert, FSU77
- Piero Carninci, RIKEN77
- Vishwanath Iyer, UTA74
- Manuel Garber, UMass68
- Sherman Weissman, Yale57
- Yijun Ruan, JAX48
- Scott Tenenbaum, SUNY-Albany42
- Kevin Struhl, HMS41
- Erez Aiden, Baylor37
- Jason Lieb, UNC37
- Christina Leslie, MSKCC32
- Eric Lécuyer, IRCM30
- Job Dekker, UMass26
- Morgan Giddings, UNC14
- Paul Khavari, Stanford13
- Will Greenleaf, Stanford13
- Feng Yue, PSU7
- John Rinn, Broad7
- Alexander Urban, Stanford6
- Rob Spitale, UCI6
- Andrew Z. Fire, Stanford4
- Brian Oliver, NIH2
- Yin Shen, UCSF1
- extremely low read depth204
- missing antibody72
- missing control alignments60
- extremely low spot score42
- control extremely low read depth21
- missing queried_RNP_size_range9
- extremely low coverage7
- extremely low read length7
- file in uploading state7
- file validation error7
- inconsistent library biosample4
- missing genetic modification characterization3
- inconsistent read count2
- missing analysis_step_run2
- missing biosample characterization2
- mixed biosample perturbations1
- insufficient read depth1763
- control insufficient read depth951
- insufficient read length565
- severe bottlenecking280
- poor library complexity276
- unreplicated experiment230
- missing spikeins173
- missing documents126
- partially characterized antibody92
- insufficient replicate concordance47
- missing possible_controls20
- insufficient coverage4
- insufficient number of aligned reads2
- missing input control2
- mild to moderate bottlenecking3443
- low read length3230
- missing biosample characterization2975
- low read depth2657
- missing genetic modification characterization2376
- moderate library complexity1586
- lacking processed data1245
- inconsistent platforms1180
- mixed read lengths1061
- missing controlled_by923
- inconsistent control read length873
- missing genetic modification reagents701
- antibody characterized with exemption672
- control low read depth663
- borderline replicate concordance566
- low spot score317
- missing external identifiers248
- improper control_type of control experiment207
- missing analysis_step_run155
- inconsistent control run_type147
- missing genotype112
- mixed run types98
- inconsistent assembly95
- low replicate concordance91
- matching md5 sums37
- borderline number of aligned reads32
- missing spikeins28
- missing fragmentation method22
- missing control_type of control experiment11
- unexpected target of control experiment11
- low coverage4
- high lambda C methylation ratio3
- moderate TSS enrichment2
- inconsistent paired_with1
Showing 25 of 17220 results
- DNase-seq of ZHBTc4Mus musculus C57BL/6 ZHBTc4 treated with 100 ng/mL doxycycline hyclate for 96 hoursLab: John Stamatoyannopoulos, UWProject: ENCODETreatment: doxycycline hyclate (CHEBI:34730) for 96 hours
- Control ChIP-seq of K562Homo sapiens K562 genetically modified using CRISPRLab: Michael Snyder, StanfordProject: ENCODE
- Control ChIP-seq of K562Homo sapiens K562 genetically modified using CRISPRLab: Michael Snyder, StanfordProject: ENCODE
- Control ChIP-seq of K562Homo sapiens K562 genetically modified using CRISPRLab: Michael Snyder, StanfordProject: ENCODE
- Control ChIP-seq of K562Homo sapiens K562 genetically modified using CRISPRLab: Michael Snyder, StanfordProject: ENCODE
- Control Mint-ChIP-seq of activated T-cellHomo sapiens activated T-cell male adult (38 years)Lab: Bradley Bernstein, BroadProject: ENCODE
- Control Mint-ChIP-seq of CD4-positive, alpha-beta T cellHomo sapiens CD4-positive, alpha-beta T cell male adult (20 years)Lab: Bradley Bernstein, BroadProject: ENCODE
- Control Mint-ChIP-seq of B cellHomo sapiens B cell male adult (22 years) treated with 0.5 μM CpG ODN for 24 hoursLab: Bradley Bernstein, BroadProject: ENCODETreatment: CpG ODN for 24 hours
- Control Mint-ChIP-seq of CD4-positive, alpha-beta memory T cellHomo sapiens CD4-positive, alpha-beta memory T cell male adult (43 years)Lab: Bradley Bernstein, BroadProject: ENCODE
- Control Mint-ChIP-seq of CD4-positive naive resting alpha-beta T cellHomo sapiens CD4-positive naive resting alpha-beta T cell male adult (43 years)Lab: Bradley Bernstein, BroadProject: ENCODE
- Control Mint-ChIP-seq of T-cellHomo sapiens T-cell male adult (38 years)Lab: Bradley Bernstein, BroadProject: ENCODE
- Control Mint-ChIP-seq of CD4-positive, CD25-positive, alpha-beta regulatory T cellHomo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cellLab: Bradley Bernstein, BroadProject: ENCODE
- Control ChIP-seq of spleenHomo sapiens spleen female adult (41 years)Lab: Bradley Bernstein, BroadProject: ENCODE
- Control ChIP-seq of heart left ventricleHomo sapiens heart left ventricle female adult (46 years)Lab: Bradley Bernstein, BroadProject: ENCODE
- Control ChIP-seq of heart left ventricleHomo sapiens heart left ventricle female adult (59 years)Lab: Bradley Bernstein, BroadProject: ENCODE
- Control ChIP-seq of heart left ventricleHomo sapiens heart left ventricle male adult (40 years)Lab: Bradley Bernstein, BroadProject: ENCODE
- Control ChIP-seq of lower lobe of left lungHomo sapiens lower lobe of left lung male adult (60 years)Lab: Bradley Bernstein, BroadProject: ENCODE
- Control ChIP-seq of lower lobe of left lungHomo sapiens lower lobe of left lung female adult (59 years)Lab: Bradley Bernstein, BroadProject: ENCODE