Summary for ENCSR978OBA
Superseded by ENCSR460EGF
Summary
- Status
- archived
- Description
- REMC Epigenome (ENCODE) for Mammary Epithelial Primary Cells using donors/samples:HMEC
- Donor diversity
- composite
- Assay
- ChIP-seq, RRBS, polyA plus RNA-seq, DNase-seq
- Target
- H3K9ac, H3K79me2, H4K20me1, H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, H3K4me3, H3K4me2, H2AFZ
- Biosample summary
- mammary epithelial cell primary cell
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E119
- External resources
- None submitted
Experiments in ENCSR978OBA
Experiments
14 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR000ALX | ChIP-seq | H3K27me3 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AML | ChIP-seq | H3K4me3 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ALW | ChIP-seq | H3K27ac | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ARG | ChIP-seq | H3K9me3 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ALY | ChIP-seq | H3K36me3 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMJ | ChIP-seq | H3K4me1 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMM | ChIP-seq | H4K20me1 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ARF | ChIP-seq | H2AFZ | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ALZ | ChIP-seq | H3K9ac | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMK | ChIP-seq | H3K4me2 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ASB | ChIP-seq | H3K79me2 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ENV | DNase-seq | ENCDO343AAA | Homo sapiens mammary epithelial cell female | John Stamatoyannopoulos, UW | released | ||
| ENCSR000DGA | RRBS | ENCDO343AAA | Homo sapiens mammary epithelial cell female | Richard Myers, HAIB | released | ||
| ENCSR000COX | polyA plus RNA-seq | ENCDO331AAA | Homo sapiens mammary epithelial cell female | Thomas Gingeras, CSHL | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000AMN | input library | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released |