Summary for ENCSR460EGF
doi:10.17989/ENCSR460EGF
Supersedes ENCSR978OBA
Summary
- Status
- released
- Description
- Reference epigenome for human mammary epithelial cell
- Donor diversity
- composite
- Assay
- ChIP-seq, polyA plus RNA-seq, RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, microRNA-seq, DNase-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, H3K4me3, CTCF
- Biosample summary
- mammary epithelial cell primary cell
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR460EGF
Experiments
13 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR000ALW | ChIP-seq | H3K27ac | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ALX | ChIP-seq | H3K27me3 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ALY | ChIP-seq | H3K36me3 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMJ | ChIP-seq | H3K4me1 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ARG | ChIP-seq | H3K9me3 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000COX | polyA plus RNA-seq | ENCDO331AAA | Homo sapiens mammary epithelial cell female | Thomas Gingeras, CSHL | released | ||
| ENCSR000CVF | small RNA-seq | ENCDO131AAA | Homo sapiens mammary epithelial cell female adult (23 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR000DUS | ChIP-seq | CTCF | ENCDO343AAA | Homo sapiens mammary epithelial cell female | John Stamatoyannopoulos, UW | released | |
| ENCSR000ENV | DNase-seq | ENCDO343AAA | Homo sapiens mammary epithelial cell female | John Stamatoyannopoulos, UW | released | ||
| ENCSR656TQD | whole-genome shotgun bisulfite sequencing | ENCDO830BUW, ENCDO344AAA | Homo sapiens mammary epithelial cell female and female adult (50 years) | Richard Myers, HAIB | released | ||
| ENCSR016JWS | ChIP-seq | H3K4me3 | ENCDO830BUW | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR020YQE | RNA-seq | ENCDO955XOD | Homo sapiens mammary epithelial cell female adult (19 years) | Barbara Wold, Caltech | released | ||
| ENCSR022IFZ | microRNA-seq | ENCDO955XOD | Homo sapiens mammary epithelial cell female adult (19 years) | Ali Mortazavi, UCI | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000AMN | input library | Homo sapiens mammary epithelial cell female adult (50 years) | Bradley Bernstein, Broad | released | |
| ENCSR000DUR | input library | Homo sapiens mammary epithelial cell female | John Stamatoyannopoulos, UW | released |