Summary for ENCSR934NIX
doi:10.17989/ENCSR934NIX
Summary
- Status
- released
- Description
- Reference epigenome for human Peyer's patch (53 year old female)
- Donor diversity
- single
- Assay
- DNase-seq, ATAC-seq, ChIP-seq, small RNA-seq, RNA-seq
- Target
- H3K9me3, H3K36me3, H3K4me3, H3K4me1, CTCF, H3K27ac, POLR2A, H3K27me3
- Biosample summary
- Homo sapiens Peyer's patch tissue female adult (53 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR934NIX
Experiments
12 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR005UXZ | ChIP-seq | H3K9me3 | Homo sapiens Peyer's patch tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR017RQC | ATAC-seq | Homo sapiens Peyer's patch tissue female adult (53 years) | Michael Snyder, Stanford | released | ||
| ENCSR363CJF | ChIP-seq | H3K36me3 | Homo sapiens Peyer's patch tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR375VXU | ChIP-seq | CTCF | Homo sapiens Peyer's patch tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR544SAU | RNA-seq | Homo sapiens Peyer's patch tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR621BZD | ChIP-seq | H3K4me1 | Homo sapiens Peyer's patch tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR718AXQ | small RNA-seq | Homo sapiens Peyer's patch tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR837SGJ | ChIP-seq | H3K27ac | Homo sapiens Peyer's patch tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR878KIY | ChIP-seq | H3K4me3 | Homo sapiens Peyer's patch tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR982PLJ | ChIP-seq | H3K27me3 | Homo sapiens Peyer's patch tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR995QNB | ChIP-seq | POLR2A | Homo sapiens Peyer's patch tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR689DSM | DNase-seq | Homo sapiens Peyer's patch tissue female adult (53 years) | John Stamatoyannopoulos, UW | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR124GAS | input library | Homo sapiens Peyer's patch tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR588APY | input library | Homo sapiens Peyer's patch tissue female adult (53 years) | Michael Snyder, Stanford | released |