Summary for ENCSR596VTT

doi:10.17989/ENCSR596VTT

Summary

Status: released
Description: REMC Epigenome (Class 1) for Fetal Lung Fibroblasts Cell Line using donors/samples:IMR90_r1;IMR90-04;IMR90-05;IMR90-06;IMR90-07
Donor diversity: single
Assay: ChIP-seq, DNase-seq, transcription profiling by array assay, whole-genome shotgun bisulfite sequencing
Target: H2BK15ac, H3K9ac, H4K91ac, H3K79me2, H3K27ac, H3K4me2, H4K5ac, H2AFZ, H2AK9ac, H2BK120ac, H3K79me1, H3K4ac, H2BK12ac, H4K20me1, H2AK5ac, H3K9me3, H3K23ac, H4K8ac, H3K36me3, H3K27me3, H3K18ac, H2BK20ac, H3K56ac, H2BK5ac, H3K4me1, H3K4me3, H3K9me1, H3K14ac
Biosample summary: Homo sapiens IMR-90
Diseases: Not reported

Attribution

Lab: Anshul Kundaje, Stanford
Award: U01DA025956 (Roadmap Epigenomics, Baylor)
Project: Roadmap
Aliases: roadmap-epigenomics:E017
External resources: IHEC:IHECRE00001041
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Experiments

37 experiments

Accession	Assay	Target	Biosample summary	Lab	Status
ENCSR888FON	whole-genome shotgun bisulfite sequencing		Homo sapiens IMR-90	Bradley Bernstein, Broad	released
ENCSR444TMC	ChIP-seq	H4K8ac	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR283STF	ChIP-seq	H3K14ac	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR713QLX	ChIP-seq	H3K79me2	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR553OEU	ChIP-seq	H3K79me1	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR831JSP	ChIP-seq	H3K4me1	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR054IRX	ChIP-seq	H2BK20ac	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR579TJT	ChIP-seq	H3K79me1	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR580LZO	ChIP-seq	H3K9me1	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR124DYB	ChIP-seq	H2AFZ	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR248KRU	ChIP-seq	H2BK5ac	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR804SRO	ChIP-seq	H4K20me1	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR431UUY	ChIP-seq	H3K27me3	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR672XZZ	ChIP-seq	H3K4me2	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR038MKB	ChIP-seq	H2AK9ac	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR039ZLS	ChIP-seq	H3K4ac	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR066VKQ	ChIP-seq	H3K56ac	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR210RXE	ChIP-seq	H2BK120ac	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR383CBN	ChIP-seq	H3K18ac	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR787SPA	transcription profiling by array assay		Homo sapiens IMR-90	John Stamatoyannopoulos, UW	archived
ENCSR523ENE	ChIP-seq	H2BK12ac	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR274TJB	ChIP-seq	H2BK15ac	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR456LCV	ChIP-seq	H3K9me3	Homo sapiens IMR-90	Bing Ren, UCSD	archived
ENCSR477RTP	DNase-seq		Homo sapiens IMR-90	John Stamatoyannopoulos, UW	released
ENCSR416LGC	ChIP-seq	H2BK12ac	Homo sapiens IMR-90	Bing Ren, UCSD	archived

Control experiments

7 control experiments

Accession	Control type	Biosample summary	Lab	Status
ENCSR366WUE	input library	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR664SHQ	input library	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR572KLD	input library	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR503UNI	input library	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR001BSB	input library	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR110LEG	input library	Homo sapiens IMR-90	Bing Ren, UCSD	released
ENCSR704GTT	input library	Homo sapiens IMR-90	Bing Ren, UCSD	released

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Summary for ENCSR596VTT

Summary

Attribution

Experiments in ENCSR596VTT

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