Summary for ENCSR518LTW
doi:10.17989/ENCSR518LTW
Summary
- Status
- released
- Description
- Reference epigenome for human Panc1 cell line
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, polyA plus RNA-seq, microRNA-seq, DNase-seq, ATAC-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, H3K4me3, CTCF
- Biosample summary
- Homo sapiens Panc1
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR518LTW
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000BOV | ChIP-seq | POLR2AphosphoS5 | Homo sapiens Panc1 | Richard Myers, HAIB | released | |
| ENCSR000BYM | polyA plus RNA-seq | Homo sapiens Panc1 | Richard Myers, HAIB | released | ||
| ENCSR000DXB | ChIP-seq | H3K4me3 | Homo sapiens Panc1 | John Stamatoyannopoulos, UW | released | |
| ENCSR000EPT | DNase-seq | Homo sapiens Panc1 | John Stamatoyannopoulos, UW | released | ||
| ENCSR000EXJ | ChIP-seq | H3K4me1 | Homo sapiens Panc1 | Peggy Farnham, USC | released | |
| ENCSR000EXK | ChIP-seq | H3K27ac | Homo sapiens Panc1 | Peggy Farnham, USC | released | |
| ENCSR000FCM | ChIP-seq | H3K36me3 | Homo sapiens Panc1 | Peggy Farnham, USC | released | |
| ENCSR000FCN | ChIP-seq | H3K9me3 | Homo sapiens Panc1 | Peggy Farnham, USC | released | |
| ENCSR000FCO | ChIP-seq | H3K27me3 | Homo sapiens Panc1 | Peggy Farnham, USC | released | |
| ENCSR203QEB | ChIP-seq | CTCF | Homo sapiens Panc1 | Michael Snyder, Stanford | released | |
| ENCSR128CYL | RNA-seq | Homo sapiens Panc1 | Barbara Wold, Caltech | released | ||
| ENCSR086DQY | microRNA-seq | Homo sapiens Panc1 | Ali Mortazavi, UCI | released | ||
| ENCSR591PIX | ATAC-seq | Homo sapiens Panc1 | Michael Snyder, Stanford | released |
Control experiments
4 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000BPP | input library | Homo sapiens Panc1 | Richard Myers, HAIB | released | |
| ENCSR000DXC | input library | Homo sapiens Panc1 | John Stamatoyannopoulos, UW | released | |
| ENCSR000EXM | input library | Homo sapiens Panc1 | Peggy Farnham, USC | released | |
| ENCSR141ITZ | input library | Homo sapiens Panc1 | Michael Snyder, Stanford | released |