Summary for ENCSR514BWH
doi:10.17989/ENCSR514BWH
Summary
- Status
- released
- Description
- Reference epigenome for mouse hindbrain (14.5 day embryonic)
- Donor diversity
- composite
- Assay
- whole-genome shotgun bisulfite sequencing, DNase-seq, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
- Target
- H3K36me3, H3K4me3, H3K27ac, H3K9ac, H3K27me3, H3K9me3, H3K4me1, H3K4me2
- Biosample summary
- B6NCrl hindbrain tissue
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR514BWH
Experiments
13 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR798FDL | ATAC-seq | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | ||
| ENCSR804EWT | whole-genome shotgun bisulfite sequencing | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue embryo (14.5 days) | Joe Ecker, Salk | released | ||
| ENCSR066XXZ | ChIP-seq | H3K36me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR689NXE | ChIP-seq | H3K9me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR417TXZ | ChIP-seq | H3K4me1 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR185JBL | ChIP-seq | H3K4me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR953LFI | ChIP-seq | H3K27me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR677GOF | microRNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl hindbrain tissue embryo (14.5 days) | Ali Mortazavi, UCI | released | ||
| ENCSR559TRB | polyA plus RNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl hindbrain tissue embryo (14.5 days) | Barbara Wold, Caltech | released | ||
| ENCSR054JHZ | ChIP-seq | H3K27ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR179PIH | DNase-seq | ENCDO956IXV | Mus musculus strain B6NCrl hindbrain tissue embryo (14.5 days) | John Stamatoyannopoulos, UW | released | ||
| ENCSR186PIV | ChIP-seq | H3K9ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR234YTN | ChIP-seq | H3K4me2 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR896PWV | input library | Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released |