Experiment summary for ENCSR559TRB

Summary

Status
released
Assay
RNA-seq (polyA RNA-seq)
Biosample summary
Mus musculus C57BL/6 hindbrain embryo (14.5 days)
Biosample Type
tissue
Replication type
isogenic
Description
PolyA RNA-Seq from oligo-dT primed Total RNA on embryonic 14.5 day mouse hindbrain
Nucleic acid type
polyadenylated mRNA
RNA integrity number
9.7 [2-1]9.6 [1-1]
Library starting quantity
10.0ng
Size range
>200
Lysis method
Ambion mirVana
Extraction method
Ambion mirVana
Fragmentation method
chemical (Nextera tagmentation)
Size selection method
SPRI beads
Strand specificity
Non-strand-specific
Spike-ins datasets
ENCSR884LPM

Attribution

ENCODE3 project
Lab
Barbara Wold, Caltech
Award
U54HG006998 (Richard Myers, HAIB)
Project
ENCODE
External resources
Date submitted
December 11, 2014
Date released
December 17, 2014
Related datasets
ENCSR328UYN 
RNA-seq on mouse hindbrain (embryonic 11.5 day - postnatal).
, ENCSR514BWH 
Reference Epigenome for mouse hindbrain (embryonic 14.5 day).
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv4

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleLibrary
21strain B6NCrl mixed sex embryo (14.5 days) hindbrain tissueENCBS233QWWENCLB567WFL
11strain B6NCrl mixed sex embryo (14.5 days) hindbrain tissueENCBS909QXIENCLB989QNS