Summary for ENCSR014GVW
doi:10.17989/ENCSR014GVW
Summary
- Status
- released
- Description
- Reference epigenome for human esophagus muscularis mucosa (53 year old female)
- Donor diversity
- single
- Assay
- RNA-seq, small RNA-seq, ChIP-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, POLR2AphosphoS5, H3K36me3, POLR2A, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR014GVW
Experiments
11 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR074SFL | ChIP-seq | CTCF | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR095YMD | ChIP-seq | H3K27ac | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR098BUF | RNA-seq | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR177CGN | ChIP-seq | H3K27me3 | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR229KWP | ChIP-seq | H3K4me1 | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR383PLJ | small RNA-seq | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR578MTT | ChIP-seq | H3K9me3 | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR607ARN | ChIP-seq | H3K4me3 | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR743KZR | ChIP-seq | H3K36me3 | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR922GUA | ChIP-seq | POLR2A | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR936JHB | ChIP-seq | POLR2AphosphoS5 | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Richard Myers, HAIB | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR834ESZ | input library | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR474WLZ | input library | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR240SYZ | input library | Homo sapiens esophagus muscularis mucosa tissue female adult (53 years) | Richard Myers, HAIB | released |