Matrix – ENCODE

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Showing 25597 results

Assay

Biosample

	TF ChIP-seq	Histone ChIP-seq	DNase-seq	Control ChIP-seq	total RNA-seq	Mint-ChIP-seq	polyA plus RNA-seq	shRNA RNA-seq	ATAC-seq	CRISPR RNA-seq	microRNA-seq	snRNA-seq	snATAC-seq	intact Hi-C	Control eCLIP	DNAme array	eCLIP	small RNA-seq	RNA Bind-n-Seq	WGBS	long read RNA-seq	ChIA-PET	Control Mint-ChIP-seq	RAMPAGE	RNA microarray	genotyping array	in situ Hi-C	CAGE	microRNA counts	siRNA RNA-seq	Repli-seq	RRBS	CRISPRi RNA-seq	long read scRNA-seq	Repli-chip	PAS-seq	Bru-seq	GM DNase-seq	RIP-seq	FAIRE-seq	BruChase-seq	RIP-chip	polyA minus RNA-seq	RNA-PET	WGS	scRNA-seq	PRO-cap	PRO-seq	BruUV-seq	MS-MS	5C	dilution Hi-C	DNA-PET	Hi-C	icSHAPE	seqFISH	GRO-cap	MRE-seq	MeDIP-seq	SPRITE	iCLIP	5' RLM RACE	MNase-seq	Switchgear	capture Hi-C	icLASER	Circulome-seq
cell line	3130	867	634	931	213	146	229	522	205	461	39	2	38	228	259	91	250	111		18	57	137	25	30	73	75	83	53	8	113	92	57	77	2	21	10	45	46	45	26	28	32	20	26	15	4	25	22	14	13	13	4	6	5	6		4	4	4		3		2	2	2	2
K562	776	19	62	286	61		19	263	64	250	2		3	8	150	3	145	7		1	4	9		1	10	2	1	9	1	50	6	1	77				2	46	8	3	2	10	3	6	4		7		1	6	2		3		2		2	1	1		3		1		1	2
HepG2	828	15	3	99	6		11	259	2	211	2		3	3	109	3	105	3		2	3	4			6	2	1	6	1		6	2					2			1	2	4	3	2	3				1		1				2										1
A549	254	86	14	88	11		27		6				2			2		9		1		2			2	2	6	3			2	1								1			1	3	1			3
HCT116	43	17	33	23	17	92	1		17		2		7	68		2					1	33	16		1		8		1			1					18				2						14	16	1					4
GM12878	189	15	4	32	5		14		2		2		3	68		3		6		1	4	6		1	7	2	6	6	1		6	2				1	2		7	1	2	11	3	2		2			1	5	2	2	3	1	2		2	1	1				1

tissue	439	2175	1605	665	447		399		225		305	390	292	108	2	121	2	67		162	116	1		104	2	7	8	17	101			17		61	1	14				7					12	15								1		5
dorsolateral prefrontal cortex	59	188	110	61	120						43			2							13																																			5
heart	6	81	41	17	21		16		7		25	49	17	7				1		10	6			2					8
adrenal gland	8	39	35	13	26		11		8		23	59	15	3	2	5	2	2		5	19			4					2			1		28
heart left ventricle	16	84	14	17	9		2		15		5	54	65	10		3				4	4			2					2			1
liver	42	91	29	29	3		20		8		7	8	8			1		1		9				2					7			1

primary cell	76	525	1201	140	277	715	151		88		52	1	29	26		38		24		7	6	60	129	28	58	37	22	30	1		12	27			7	13	4			4	4		11	4		8	1		2			3
CD4-positive, alpha-beta T cell	1	18	162	5	2	6	2		1		1		1	2								2	1
naive thymus-derived CD4-positive, alpha-beta T cell		16	16	3	5	74	8		2		2		2	2								2	13				1
T-cell		11	76	3	14	18	1		7											1		4	3												1
stimulated activated CD4-positive, alpha-beta T cell			133
CD14-positive monocyte	2	21	39	4		41	8						2	2				1		1			8					1															1

whole organisms	1292			1285	272		80	105																				19								16									3																	2					1
whole organism	1292			1285	268		72	105																				15								15									3																	2					1
carcass					4		8																					4								1

in vitro differentiated cells	58	265	48	61	55	78	23		41		17	2	11			6		12		24	17	2	13	6	6	4	9	1	5			2		1	34	1							1			3				1										3
dendritic cell		11			25				30																																					3														3
motor neuron		18		6	9				10											10							9
endodermal cell	1	8	2	3	3	12	2				2		1							2	8		2												2	1
neuronal stem cell		27	1	5			2											1		2															1
neural progenitor cell	4	12	1	2	1	6					1					1		1				1	1	1					1						3

cell-free sample																			213
cell-free sample																			213

organoid	7		2	7		48																	8
brain	4		2	4		30																	5
nephron	3			3		18																	3

technical sample					1																7
technical sample					1																7

Experiment Matrix

Showing 25597 results