Matrix – ENCODE

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Showing 27043 results

Assay

Biosample

	TF ChIP-seq	Histone ChIP-seq	DNase-seq	Control ChIP-seq	total RNA-seq	Mint-ChIP-seq	polyA plus RNA-seq	shRNA RNA-seq	ATAC-seq	CRISPR RNA-seq	long read RNA-seq	microRNA-seq	snRNA-seq	snATAC-seq	intact Hi-C	Control eCLIP	DNAme array	eCLIP	PRO-cap	small RNA-seq	RNA Bind-n-Seq	WGBS	ChIA-PET	Control Mint-ChIP-seq	RAMPAGE	RNA microarray	in situ Hi-C	genotyping array	CAGE	microRNA counts	siRNA RNA-seq	Repli-seq	RRBS	CRISPRi RNA-seq	long read scRNA-seq	Repli-chip	PAS-seq	Bru-seq	GM DNase-seq	RIP-seq	FAIRE-seq	BruChase-seq	RIP-chip	polyA minus RNA-seq	RNA-PET	WGS	scRNA-seq	PRO-seq	BruUV-seq	MS-MS	5C	dilution Hi-C	DNA-PET	Hi-C	icSHAPE	seqFISH	GRO-cap	MRE-seq	MeDIP-seq	SPRITE	iCLIP	5' RLM RACE	MNase-seq	Switchgear	capture Hi-C	icLASER	Circulome-seq
cell line	3130	867	634	931	812	146	253	522	205	461	61	39	2	38	228	259	91	250	44	111		18	137	25	30	73	84	75	53	8	113	92	57	77	2	21	10	45	46	45	26	28	32	20	26	15	4	22	14	13	13	4	6	5	6		4	4	4		3		2	2	2	2
K562	776	19	62	286	61		19	263	64	250	4	2		3	8	150	3	145	7	7		1	9		1	10	1	2	9	1	50	6	1	77				2	46	8	3	2	10	3	6	4			1	6	2		3		2		2	1	1		3		1		1	2
HepG2	828	15	3	99	6		11	259	2	211	3	2		3	3	109	3	105		3		2	4			6	1	2	6	1		6	2					2			1	2	4	3	2	3			1		1				2										1
A549	254	86	14	88	11		27		6					2			2		1	9		1	2			2	6	2	3			2	1								1			1	3	1		3
HCT116	43	17	33	23	17	92	1		17		1	2		7	68		2		16				33	16		1	8			1			1					18				2						16	1					4
GM12878	189	15	4	32	5		14		2		4	2		3	68		3			6		1	6		1	7	6	2	6	1		6	2				1	2		7	1	2	11	3	2		2		1	5	2	2	3	1	2		2	1	1				1

tissue	439	2175	1605	665	453		393		225		344	305	390	292	110	2	121	2	141	67		162	1		104	2	8	7	17	101			17		61	1	14				7					12	15							1		5
dorsolateral prefrontal cortex	59	188	110	61	120						13	43			2																																									5
heart	6	81	41	17	21		16		7		25	25	49	17	7					1		10			2					8
adrenal gland	8	39	35	13	27		10		8		26	23	59	15	3	2	5	2	3	2		5			4					2			1		28																			1
heart left ventricle	16	84	14	17	9		2		15		4	5	54	65	10		3		6			4			2					2			1
liver	42	91	29	29	3		20		8		8	7	8	8			1		5	1		9			2					7			1

primary cell	76	525	1201	140	656	715	147		88		6	52	1	29	26		38		25	24		8	60	129	28	58	25	37	30	1		12	27			7	13	4			4	4		11	4		8		2			3
CD4-positive, alpha-beta T cell	1	18	162	5	191	6	2		1			1		1	2								2	1
T-cell		11	76	3	51	18			7										7			1	4	3												1
naive thymus-derived CD4-positive, alpha-beta T cell		16	20	3	6	74	8		2			2		2	2								2	13			1
CD14-positive monocyte	2	21	39	4	12	41	7							2	2					1		1		8					1															1
stimulated activated CD4-positive, alpha-beta T cell			133		6

whole organisms	1292			1285	272		80	105																					19								16									3																2					1
whole organism	1292			1285	268		72	105																					15								15									3																2					1
carcass					4		8																						4								1

in vitro differentiated cells	58	265	48	61	55	78	23		41		17	17	2	11	2		6		9	12		24	2	13	6	6	12	4	1	5			2		1	34	1							1			3			1										3
dendritic cell		11			25				30																																						3													3
motor neuron		18		6	9				10													10					9
endodermal cell	1	8	2	3	3	12	2				8	2		1					1			2		2			1									2	1
neuronal stem cell		27	1	5			2													1		2														1
neural progenitor cell	4	12	1	2	1	6						1					1			1			1	1	1					1						3

cell-free sample																					213
cell-free sample																					213

organoid	7		2	7		48													5					8
brain	4		2	4		30																		5
nephron	3			3		18																		3
pancreas																			5

technical sample					1						13
technical sample					1						13

Experiment Matrix

Showing 27043 results