Matrix – ENCODE

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Assay

Biosample

	TF ChIP-seq	Histone ChIP-seq	DNase-seq	total RNA-seq	Mint-ChIP-seq	polyA plus RNA-seq	ATAC-seq	long read RNA-seq	microRNA-seq	snRNA-seq	snATAC-seq	intact Hi-C	eCLIP	DNAme array	WGBS	small RNA-seq	PRO-cap	ChIA-PET	RAMPAGE	RNA microarray	genotyping array	CAGE	microRNA counts	RNA Bind-n-Seq	in situ Hi-C	Repli-seq	RRBS	long read scRNA-seq	Repli-chip	PAS-seq	BruChase-seq	polyA minus RNA-seq	FAIRE-seq	RNA-PET	WGS	scRNA-seq	RIP-chip	Bru-seq	BruUV-seq	MS-MS	5C	RIP-seq	dilution Hi-C	DNA-PET	seqFISH	GRO-cap	MRE-seq	MeDIP-seq	SPRITE	iCLIP	5' RLM RACE	Hi-C	MNase-seq	PRO-seq	Switchgear	capture Hi-C	Circulome-seq
tissue	439	2175	1605	453		393	225	344	305	390	292	110	2	121	162	67	141	1	104	2	7	17	101		8		17	61	1	14			7		12	12									5							1
dorsolateral prefrontal cortex	59	188	110	120				13	43			2																																	5
heart	6	81	41	21		16	7	25	25	49	17	7			10	1			2				8
adrenal gland	8	39	35	27		10	8	26	23	59	15	3	2	5	5	2	3		4				2				1	28																								1
heart left ventricle	16	84	14	9		2	15	4	5	54	65	10		3	4		6		2				2				1
liver	42	91	29	3		20	8	8	7	8	8			1	9	1	5		2				7				1

cell line	2831	773	583	735	54	210	123	61	39	2	32	161	250	87	18	110	27	108	29	67	73	50	8		67	92	50	2	21	8	28	19	19	26	15	4	18	15	14	13	12	9	4	6		4	4	4		3		1	2	2	2	2
K562	749	19	59	17		15	4	4	2		3	8	145	3	1	7	7	9	1	9	2	9	1		1	6	1				2	3	1	6	4		6	1	1	6	2	5		3		2	1	1		3			1			1
HepG2	814	15	3	6		11	2	3	2		3	3	105	3	2	3		4		6	2	6	1		1	6	2				2	3	1	2	3		2	1	1		1															1
GM12878	188	15	4	5		14	2	4	2		3	68		3	1	6		6	1	7	2	6	1		6	6	2			1	2	3	1	2		2	7	1	1	5	2	4	2	3		2	1	1				1	1
MCF-7	150	18	66	1		4	1	1	2		3	1		2		7		4		2	2	3	1			6	3				2	1	1	3				1	1		1
HEK293	204	6												2			1	2		1	2						2

primary cell	74	506	1194	654	715	132	76	6	52	1	29	26		38	8	24	25	60	16	57	37	30	1		20	12	27		7	1	4	11	4	4		2		2	2				3
CD4-positive, alpha-beta T cell	1	12	160	191	6	2	1		1		1	2						2
T-cell		11	75	51	18		7								1		7	4											1
stimulated activated CD4-positive, alpha-beta T cell			133	6
naive thymus-derived CD4-positive, alpha-beta T cell		16	20	6	74	8	2		2		2	2						2							1
CD14-positive monocyte	2	21	39	12	41	7					2	2			1	1						1										1

whole organisms	1292			68		41																19								16					3																2						1
whole organism	1292			64		33																15								15					3																2						1
carcass				4		8																4								1

in vitro differentiated cells	47	240	41	53	78	22	40	17	16	2	11	2		5	24	11	9	2	6	2	4	1	4		12		2	1	30	1		1				3				1									3
dendritic cell		11		25			30																													3													3
motor neuron		18		9			10								10										9
endodermal cell	1	8	2	3	12	2		8	2		1				2		1								1				2	1
neuronal stem cell		27	1			2									2	1													1
mesenchymal stem cell		27	1			2									1	1													1

cell-free sample																								111
cell-free sample																								111

organoid	7		2		48												5
brain	4		2		30
nephron	3				18
pancreas																	5

technical sample				1				13
technical sample				1				13

Experiment Matrix

Showing 20671 results