Matrix – ENCODE

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Showing 620734 results

Type

Biosample

	footprints	imputation	candidate Cis-Regulatory Elements	pseudobulk	gkm-SVM-model	element gene regulatory interaction predictions	BPNet-model	PWMs	chromatin state	ChromBPNet-model	BPNet-control	ChromBPNet-bias-model	fine-mapped variants	cell type annotation	enhancer predictions	eQTLs	physical modeling	genotyping	binding sites	cross-species functional conservation	other	regulatory elements signal matrix	overlap	gene expression	transcript expression	representative DNase hypersensitivity sites	validated enhancers	caQTLs	exclusion list	curated SNVs	consensus DNase hypersensitivity sites	transcription start sites	element gene regulatory interactions	in vivo enhancer evaluations
tissue	175649	28105	3752	5708	1393	1680	293		1161	783	267	208		114	4	53	35		1		7		1				3	2
adrenal gland	4082	881	81	818	46	36	5		23	22	5	2		5		1	1				2
gastrocnemius medialis	4655	408	20		20	13	5		12	8	5	1				1	1
stomach	3501	1013	134	18	47	52	7		48	22	7	14		4		1	1
right lobe of liver	4670	102	15		18	12	4		7	11	4					1	1
upper lobe of left lung	4078	388	16		24	16	11		10	7	11					1

cell line	189744	12205	1110		3070	616	2237		358	243	701	12				9	12		25				14				4	3		2			1	1
K562	5735	487	25		753	17	532		14	11	244	3					1		15				1										1	1
MCF-7	6140	338	28		156	15	107		8	2	28						1		1
HeLa-S3	4143	437	22		71	9	47		8	2	11												2
A549	3068	787	18		257	23	202		24	3	79
HepG2	2487	318	14		650	7	627		9	7	93	2					1						1

primary cell	148470	11687	1781		573	1318	55		459	467	52	63				3	9		6				2					2
B cell	4721	557	42		10	15	2		12	6	2	1					1
CD14-positive monocyte	4067	335	45		8	21	2		16	4	2	1					1
T-helper 17 cell	4065	184	15		7	18			4	9		1
T-helper 2 cell	4049	51	22		7	23			4	7		2
CD4-positive naive resting alpha-beta T cell	4069	24	6		5

in vitro differentiated cells	18598	2559	270		143	143	28		99	69	23	9																2
dendritic cell	2337				59					24
cardiac muscle cell	1161	18	8		3	6	1		2	1	1
mesothelial cell of epicardium	1154		1		2	5	1		1	1	1
hematopoietic multipotent progenitor cell	584	254	38		12	29			10	12		2
mesenchymal stem cell	585	306	15		1	5			10	1		1

organoid	1160		13		6	4	7		8	1	7
brain	1160		7		3	3	4		5	1	4
nephron			6		3		3		3		3
intestinal epithelium						1

Annotation Matrix

Showing 620734 results