Matrix – ENCODE

Filter the annotations included in the matrix:

Type

Biosample

	footprints	imputation	candidate Cis-Regulatory Elements	gkm-SVM-model	PWMs	element gene regulatory interaction predictions	chromatin state	fine-mapped variants	enhancer predictions	eQTLs	physical modeling	binding sites	genotyping	cross-species functional conservation	regulatory elements signal matrix	overlap	other	gene expression	transcript expression	representative DNase hypersensitivity sites	validated enhancers	caQTLs	BPNet-model	exclusion list	curated SNVs	consensus DNase hypersensitivity sites	transcription start sites	in vivo enhancer evaluations
tissue	175649	28105	3726	1228		1016	1161		4	53	34	1				1	2				3	2
adrenal gland	4082	881	81	39		21	23			1	1						1
gastrocnemius medialis	4655	408	20	17		7	12			1	1
right lobe of liver	4670	102	15	13		7	7			1	1
stomach	3501	1013	133	41		31	48			1	1
upper lobe of left lung	4078	388	16	24		9	10			1

cell line	189744	12205	1109	2887		407	358			9	12	25				14					4	3	5		2			1
K562	5735	487	25	711		10	14				1	15				1							1					1
MCF-7	6140	338	28	155		8	8				1	1
HeLa-S3	4143	437	22	71		5	8									2
A549	3068	787	18	251		9	24
HepG2	2487	318	14	648		5	9				1					1

primary cell	148470	11687	1781	496		774	459			3	9	6				2						2	1
B cell	4721	557	42	9		9	12				1
CD14-positive monocyte	4067	335	45	8		13	16				1
T-helper 17 cell	4065	184	15	4		11	4
T-helper 2 cell	4049	51	22	7		14	4
CD4-positive naive resting alpha-beta T cell	4069	24	6	5

in vitro differentiated cells	18598	2559	270	103		101	99															2
dendritic cell	2337			30
cardiac muscle cell	1161	18	8	3		4	2
mesothelial cell of epicardium	1154		1	2		3	1
mesenchymal stem cell	585	306	15	1		4	10
hematopoietic multipotent progenitor cell	584	254	38	12		17	10

organoid	1160		13	6		2	8
brain	1160		7	3		1	5
nephron			6	3			3
intestinal epithelium						1

Annotation Matrix