Matrix – ENCODE

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Type

Biosample

	footprints	imputation	candidate Cis-Regulatory Elements	pseudobulk	gkm-SVM-model	element gene regulatory interaction predictions	PWMs	chromatin state	fine-mapped variants	cell type annotation	enhancer predictions	eQTLs	physical modeling	ChromBPNet-model	genotyping	binding sites	cross-species functional conservation	other	regulatory elements signal matrix	overlap	gene expression	transcript expression	representative DNase hypersensitivity sites	validated enhancers	caQTLs	ChromBPNet-bias-model	BPNet-model	exclusion list	curated SNVs	consensus DNase hypersensitivity sites	transcription start sites	element gene regulatory interactions	in vivo enhancer evaluations
tissue	175649	28105	3752	5708	1393	1680		1161		114	4	53	35	34		1		7		1				3	2	1
adrenal gland	4082	881	81	818	46	36		23		5		1	1					2
gastrocnemius medialis	4655	408	20		20	13		12				1	1
right lobe of liver	4670	102	15		18	12		7				1	1
stomach	3501	1013	134	18	47	52		48		4		1	1
upper lobe of left lung	4078	388	16		24	16		10				1

cell line	189744	12205	1110		3070	615		358				9	12	9		25				14				4	3	7	5		2			1	1
K562	5735	487	25		753	17		14					1	2		15				1						2	1					1	1
MCF-7	6140	338	28		156	15		8					1			1
HeLa-S3	4143	437	22		71	9		8												2
A549	3068	787	18		257	23		24
HepG2	2487	318	14		650	7		9					1	2						1						2

primary cell	148470	11687	1781		573	1317		459				3	9			6				2					2		1
B cell	4721	557	42		10	15		12					1
CD14-positive monocyte	4067	335	45		8	21		16					1
T-helper 17 cell	4065	184	15		7	18		4
T-helper 2 cell	4049	51	22		7	23		4
CD4-positive naive resting alpha-beta T cell	4069	24	6		5

in vitro differentiated cells	18598	2559	270		143	143		99																	2
dendritic cell	2337				59
cardiac muscle cell	1161	18	8		3	6		2
mesothelial cell of epicardium	1154		1		2	5		1
hematopoietic multipotent progenitor cell	584	254	38		12	29		10
mesenchymal stem cell	585	306	15		1	5		10

organoid	1160		13		6	4		8
brain	1160		7		3	3		5
nephron			6		3			3
intestinal epithelium						1

Annotation Matrix

Showing 615261 results