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Summary for ENCSR968CIN

Summary

Status
released
Description
Functional characterization series for the gene target FADS2.
Donor diversity
single
Assay
Flow-FISH CRISPR screen
Biosample summary
Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr11:61555996-61664628
Diseases
Not reported
Treatments
doxycycline
Elements references
Tiling modality
full tiling

Attribution

ENCODE4 project
Lab
Pardis Sabeti, Broad
Award
UM1HG009435 (Pardis Sabeti, Broad)
Project
ENCODE
Aliases
pardis-sabeti:FADS2_series_FADS
External resources
None submitted

Experiments in ENCSR968CIN

Experiments
2 experiments
Accession
Assay
Examined loci
Biosample summary
Lab
Status
Cart
ENCSR427ERRFlow-FISH CRISPR screenFADS2 (90-100%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr11:61555996-61664628Pardis Sabeti, Broad
released
ENCSR009YJOFlow-FISH CRISPR screenFADS2 (0-10%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr11:61555996-61664628Pardis Sabeti, Broad
released
Control experiments
2 control experiments
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR429DUUcontrolHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr11:61555996-61664628Pardis Sabeti, Broad
released
ENCSR674ATBcontrolPardis Sabeti, Broad
released

Files

Filter files

File format
Output type
Replicates
|
Displaying 4 of 4 files

Lab custom GRCh38 (ENCAN904YOU) processed data
(4 Files)   

Accession
File type
Output type
Genome assembly
Date added
File size
File status
ENCFF149IDL
bed CRISPR element quantificationselement quantificationsGRCh382021-05-13223 B
released
ENCFF923ZPB
bigWigperturbation signalGRCh382021-05-13227 kB
released
ENCFF734CNO
bigWigperturbation signalGRCh382021-05-13227 kB
released
ENCFF996MMO
bigInteractelement gene interactions signalGRCh382021-05-1320.7 kB
released