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Summary for ENCSR794SPV

Summary

Status
released
Description
Functional characterization series for the gene target CAT.
Donor diversity
single
Assay
Flow-FISH CRISPR screen
Biosample summary
Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr11:33064196-34664119
Diseases
Not reported
Treatments
doxycycline
Elements references
Tiling modality
full tiling

Attribution

ENCODE4 project
Lab
Pardis Sabeti, Broad
Award
UM1HG009435 (Pardis Sabeti, Broad)
Project
ENCODE
Aliases
pardis-sabeti:CAT_series_LMO2
External resources
None submitted

Experiments in ENCSR794SPV

Experiments
2 experiments
Accession
Assay
Examined loci
Biosample summary
Lab
Status
Cart
ENCSR687CFNFlow-FISH CRISPR screenCAT (90-100%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr11:33064196-34664119Pardis Sabeti, Broad
released
ENCSR639EDXFlow-FISH CRISPR screenCAT (0-10%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr11:33064196-34664119Pardis Sabeti, Broad
released
Control experiments
2 control experiments
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR327XSOcontrolHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr11:33064196-34664119Pardis Sabeti, Broad
released
ENCSR321OIBcontrolPardis Sabeti, Broad
released

Files

Filter files

File format
Output type
Replicates
|
Displaying 4 of 4 files

Lab custom GRCh38 (ENCAN095VUQ) processed data
(4 Files)   

Accession
File type
Output type
Genome assembly
Date added
File size
File status
ENCFF619FXH
bed CRISPR element quantificationselement quantificationsGRCh382021-05-13173 B
released
ENCFF918VCM
bigWigperturbation signalGRCh382021-05-13921 kB
released
ENCFF965PMF
bigWigperturbation signalGRCh382021-05-13919 kB
released
ENCFF412KTS
bigInteractelement gene interactions signalGRCh382021-05-1320.6 kB
released