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Summary for ENCSR759RSA

Summary

Status
released
Description
Functional characterization series for the gene target HBS1L.
Donor diversity
single
Assay
Flow-FISH CRISPR screen
Biosample summary
Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple loci
Diseases
Not reported
Treatments
doxycycline
Elements references
  • ENCSR827WZZ (GRCh38 chr6:134253818-136927606, GRCh38 chr11:4091879-6419323)
Tiling modality
full tiling

Attribution

ENCODE4 project
Lab
Pardis Sabeti, Broad
Award
UM1HG009435 (Pardis Sabeti, Broad)
Project
ENCODE
Aliases
pardis-sabeti:HBS1L_series_HEME
External resources
None submitted

Experiments in ENCSR759RSA

Experiments
2 experiments
Accession
Assay
Examined loci
Biosample summary
Lab
Status
Cart
ENCSR516MPEFlow-FISH CRISPR screenHBS1L (90-100%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociPardis Sabeti, Broad
released
ENCSR298NSDFlow-FISH CRISPR screenHBS1L (0-10%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociPardis Sabeti, Broad
released
Control experiments
2 control experiments
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR692ZUMcontrolHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple lociPardis Sabeti, Broad
released
ENCSR206MVLcontrolPardis Sabeti, Broad
released

Files

Filter files

File format
Output type
Replicates
|
Displaying 4 of 4 files

Lab custom GRCh38 (ENCAN401JFN) processed data
(4 Files)   

Accession
File type
Output type
Genome assembly
Date added
File size
File status
ENCFF337VVS
bed CRISPR element quantificationselement quantificationsGRCh382021-09-23144 B
released
ENCFF130XRV
bigWigperturbation signalGRCh382021-09-23655 kB
released
ENCFF279WUO
bigWigperturbation signalGRCh382021-09-23656 kB
released
ENCFF302POA
bigInteractelement gene interactions signalGRCh382021-09-2314.4 kB
released