Summary for ENCSR009KPS
Summary
- Status
- released
- Description
- Functional characterization series for the gene target HDAC6.
- Donor diversity
- single
- Assay
- Flow-FISH CRISPR screen
- Biosample summary
- Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chrX:48397929-49657009
- Diseases
- Not reported
- Treatments
- doxycycline
- Elements references
- ENCSR645TEA (GRCh38 chrX:48397929-49657009)
- Tiling modality
- peak tiling
Attribution
ENCODE4 project
- Lab
- Pardis Sabeti, Broad
- Award
- UM1HG009435 (Pardis Sabeti, Broad)
- Project
- ENCODE
- Aliases
- pardis-sabeti:HDAC6_series_GATA
- External resources
- None submitted
Experiments in ENCSR009KPS
Experiments
2 experiments
Accession | Assay | Examined loci | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|---|
ENCSR169ALP | Flow-FISH CRISPR screen | HDAC6 (90-100%) | Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chrX:48397929-49657009 | Pardis Sabeti, Broad | released | |
ENCSR808JNJ | Flow-FISH CRISPR screen | HDAC6 (0-10%) | Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chrX:48397929-49657009 | Pardis Sabeti, Broad | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|
ENCSR925GGJ | control | Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chrX:48397929-49657009 | Pardis Sabeti, Broad | released | |
ENCSR449TVF | control | Pardis Sabeti, Broad | released |