Functional Characterization Experiment summary for ENCSR806PQN
Superseded by ENCSR312UQM
Summary
- Status
- archived
- Assay
- STARR-seq
- Biosample summary
- Homo sapiens K562 genetically modified (episome) using transient transfection
- Biosample Type
- cell line
- Replication type
- isogenic
- Nucleic acid type
- RNA
- Size range
- >200
- Extraction method
- RNeasy
- Strand specificity
- unstranded
- Platform
- Illumina NextSeq 500
- Controls
- Elements references
Attribution
ENCODE4 project
- Lab
- Tim Reddy, Duke
- Award
- UM1HG009428 (Tim Reddy, Duke)
- Project
- ENCODE
- Aliases
- tim-reddy:encode4-atacstarr-rna, tim-reddy:k562-atacstarr-output
- Date submitted
- April 6, 2020
- Date released
- March 21, 2023
- Submitter comment
- The document /documents/331c860b-1f34-4c9a-86ad-50ed1bf02d94/ was previously attached to this experiment. It is now deprecated. Please refer to the currently attached documents.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 3 | 1 | Homo sapiens K562 cell line genetically modified (episome) using transient transfection | ENCBS406RDS | ENCGM845IYM | ENCLB171NKX |
| 2 | 1 | Homo sapiens K562 cell line genetically modified (episome) using transient transfection | ENCBS021XPU | ENCGM845IYM | ENCLB473HCC |
| 1 | 1 | Homo sapiens K562 cell line genetically modified (episome) using transient transfection | ENCBS470VCJ | ENCGM845IYM | ENCLB897TRL |