Functional Characterization Experiment summary for ENCSR019PDV
doi:10.17989/ENCSR019PDV
Summary
- Status
- released
- Assay
- CRISPR screen (Control CRISPR screen)
- Control type
- control
- Biosample summary
- Homo sapiens WTC11 genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens SIN3A, (insertion) using transduction, using CRISPR cutting (pgRNA) for SIN3A locus
- Biosample Type
- cell line
- Perturbation type
- CRISPR cutting
- Tiling modality
- full tiling
- Replication type
- isogenic
- Nucleic acid type
- DNA
- Platform
- Illumina NovaSeq 6000
- Elements references
Attribution
ENCODE4 project
- Lab
- Yin Shen, UCSF
- Award
- UM1HG009402 (Yin Shen, UCSF)
- Project
- ENCODE
- Aliases
- yin-shen:Not sorted control assay_SIN3A
- Date released
- July 19, 2022
- Functional Characterization Series
- ENCSR192UAI , ENCSR066VPH
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens SIN3A, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (pgRNA) | ENCBS712ZCE | ENCGM635WFO, ENCGM232DQE, ENCGM544NZE | ENCLB522VDO |
| 2 | 1 | Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens SIN3A, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (pgRNA) | ENCBS368VYT | ENCGM635WFO, ENCGM232DQE, ENCGM544NZE | ENCLB596TUB |