1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. SK-N-MC

Experiment summary for ENCSR835MMN

doi:10.17989/ENCSR835MMN

Summary

Status
released
Assay
ChIP-seq (Histone ChIP-seq)
Target
H3K27ac
Biosample summary
Homo sapiens SK-N-MC
Biosample Type
cell line
Replication type
isogenic
Description
ChIP-seq against H3K27ac using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/biosample/3151999, www.ncbi.nlm.nih.gov/pubmed/25453903).
Nucleic acid type
DNA
Library starting quantity
96.25ng
Size range
200-600
Fragmentation methods
sonication (generic)
Controls

Attribution

ENCODE3 project
Lab
Bradley Bernstein, Broad
Award
U54HG006991 (Bradley Bernstein, Broad)
Project
ENCODE
External resources
Aliases
bradley-bernstein:Project Element 829
Date submitted
December 23, 2015
Date released
November 18, 2016
Reference Epigenome
ENCSR394KIB 
Tags
Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens SK-N-MC cell lineENCBS203EZTENCAB000AQNENCLB020HPB
21Homo sapiens SK-N-MC cell lineENCBS273LICENCAB000AQNENCLB280GVZ

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