Experiment summary for ENCSR819NBT
doi:10.17989/ENCSR819NBT
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- tbx-9
- Biosample summary
- Caenorhabditis elegans strain OP636 (unc-119(tm4063) III; wgIs636) whole organism young adult 63 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans tbx-9
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing TBX-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:TBX-9-OP636-yAd
- Date submitted
- October 4, 2016
- Date released
- October 10, 2016
- Submitter comment
- ENCFF867QUT, ENCFF545BVT were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain OP636 (unc-119(tm4063) III; wgIs636) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans tbx-9 | ENCBS603YAT | ENCGM972YTT | ENCAB728YTO | ENCLB586VCN |
| 1 | 1 | Caenorhabditis elegans strain OP636 (unc-119(tm4063) III; wgIs636) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans tbx-9 | ENCBS469GAO | ENCGM972YTT | ENCAB728YTO | ENCLB862KWC |