Experiment summary for ENCSR662PLB
doi:10.17989/ENCSR662PLB
Summary
- Status
- released
- Assay
- ChIP-seq (Histone ChIP-seq)
- Target
- H3K4me3
- Biosample summary
- Homo sapiens neuroepithelial stem cell stably expressing HES5 originated from H9
- Biosample Type
- in vitro differentiated cells
- Replication type
- isogenic
- Nucleic acid type
- DNA
- Size range
- 200-600 [3-3]200-600 [1-3]300-1000 [2-1]
- Fragmentation methods
- shearing (Covaris generic) [3-3]none [1-3]none [2-1]
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 2500
- Controls
Attribution
ENCODE3 project
- Lab
- Bradley Bernstein, Broad
- Award
- U54HG006991 (Bradley Bernstein, Broad)
- Project
- ENCODE
- External resources
- Aliases
- bradley-bernstein:Project Element 975
- Date submitted
- February 20, 2015
- Date released
- May 20, 2016
- Reference Epigenome
- ENCSR978RSW
- Submitter comment
- As of March 30th, 2017, this experiment has been rerun on both GRCh38 and hg19 using replicates 1 and 3.
- Tags
- Registry of cCREs
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 3 | 3 | Homo sapiens female embryo (5 days) neuroepithelial stem in vitro differentiated cells stably expressing C-terminal eGFP-tagged HES5 originated from H9 | ENCBS435FHS | ENCGM252BLF | ENCAB582RSV | ENCLB200JGZ |
| 1 | 3 | Homo sapiens female embryo (5 days) neuroepithelial stem in vitro differentiated cells stably expressing C-terminal eGFP-tagged HES5 originated from H9 | ENCBS562NPI | ENCGM252BLF | ENCAB582RSV | ENCLB445WPO |
| 2 | 1 | Homo sapiens female embryo (5 days) neuroepithelial stem in vitro differentiated cells stably expressing C-terminal eGFP-tagged HES5 originated from H9 | ENCBS363SWF | ENCGM252BLF | ENCAB000AUU | ENCLB597CQD |