Experiment summary for ENCSR617PLK

Summary

Status
released
Assay
ChIP-seq
Biosample summary
Caenorhabditis elegans strain OP700 (wgIs700(drap-1::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0086_1E01);unc-119(+));unc-119 (tm4063)) whole organism mixed stage (embryo) (3 hours) using egg bleaching genetically modified using bombardment
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic worms expressing drap-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation method
sonication (Bioruptor generic)
Size selection method
SPRI
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:DRAP-1_OP700_EM
Date submitted
May 30, 2018
Date released
June 12, 2018

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
21strain OP700 (wgIs700(drap-1::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0086_1E01);unc-119(+));unc-119 (tm4063)) mixed sex mixed stage (embryo) (3 hours) using egg bleaching whole organism genetically modified (insertion) using bombardment targeting eGFP-drap-1ENCBS803FBQENCGM126PQFENCAB728YTOENCLB837OXT
41strain OP700 (wgIs700(drap-1::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0086_1E01);unc-119(+));unc-119 (tm4063)) mixed sex mixed stage (embryo) (3 hours) using egg bleaching whole organism genetically modified (insertion) using bombardment targeting eGFP-drap-1ENCBS285YPWENCGM126PQFENCAB728YTOENCLB807IOU
31strain OP700 (wgIs700(drap-1::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0086_1E01);unc-119(+));unc-119 (tm4063)) mixed sex mixed stage (embryo) (3 hours) using egg bleaching whole organism genetically modified (insertion) using bombardment targeting eGFP-drap-1ENCBS987PRXENCGM126PQFENCAB728YTOENCLB918WWH