Experiment summary for ENCSR598GFQ

Summary

Status
released
Assay
ChIP-seq
Biosample summary
Caenorhabditis elegans strain OP677 (unc-119(tm4063) III; wgIs677) whole organism late embryo 6 hours post synchronization using egg bleaching genetically modified using bombardment
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq of transgenic worms expressing CHE-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Fragmentation method
sonication (generic microtip)
Size selection method
SPRI
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:CHE-1-OP677-LE
Date submitted
October 4, 2016
Date released
October 11, 2016
Submitter comment
ENCFF967FND, ENCFF399SGH, ENCFF087FMJ, ENCFF525LBJ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
11strain OP677 (unc-119(tm4063) III; wgIs677) mixed sex late embryo 6 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting eGFP-che-1ENCBS084OYGENCGM329MLIENCAB728YTOENCLB829OQC
21strain OP677 (unc-119(tm4063) III; wgIs677) mixed sex late embryo 6 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting eGFP-che-1ENCBS329SIQENCGM329MLIENCAB728YTOENCLB022ZOJ