Experiment summary for ENCSR598GFQ
doi:10.17989/ENCSR598GFQ
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- che-1
- Biosample summary
- Caenorhabditis elegans strain OP677 (unc-119(tm4063) III; wgIs677) whole organism late embryo 6 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans che-1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing CHE-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:CHE-1-OP677-LE
- Date submitted
- October 4, 2016
- Date released
- October 11, 2016
- Submitter comment
- ENCFF967FND, ENCFF399SGH, ENCFF087FMJ, ENCFF525LBJ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain OP677 (unc-119(tm4063) III; wgIs677) mixed sex late embryo 6 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans che-1 | ENCBS084OYG | ENCGM329MLI | ENCAB728YTO | ENCLB829OQC |
| 2 | 1 | Caenorhabditis elegans strain OP677 (unc-119(tm4063) III; wgIs677) mixed sex late embryo 6 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans che-1 | ENCBS329SIQ | ENCGM329MLI | ENCAB728YTO | ENCLB022ZOJ |