Experiment summary for ENCSR545HTM
doi:10.17989/ENCSR545HTM
Summary
- Status
- released
- Assay
- CRISPRi followed by RNA-seq (CRISPRi RNA-seq)
- Target
- USF1
- Biosample summary
- Homo sapiens K562 genetically modified (interference) using CRISPR targeting H. sapiens USF1
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on K562 cells treated by CRISPR interference targeting USF1.
- Nucleic acid type
- RNA
- Size range
- >200
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:E-K562-CRISPRi-USF1
- Date submitted
- September 30, 2017
- Date released
- November 18, 2017
- Gene Silencing Series
- ENCSR366ONT
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting H. sapiens USF1 | ENCBS132SWD | ENCGM164DFM | ENCLB528PEP |
| 2 | 1 | Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting H. sapiens USF1 | ENCBS753CQR | ENCGM164DFM | ENCLB605JDN |