Experiment summary for ENCSR016WFQ
doi:10.17989/ENCSR016WFQ
Summary
- Status
- released
- Assay
- CRISPRi followed by RNA-seq (CRISPRi RNA-seq)
- Control type
- non-specific target
- Biosample summary
- Homo sapiens K562 genetically modified (interference) using CRISPR
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on K562 cells treated by CRISPR interference for a non-specific target (batch C control).
- Nucleic acid type
- RNA
- Size range
- >200
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 4000
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:E-K562-CRISPRi-Ctrl-tx-C
- Date submitted
- March 28, 2017
- Date released
- November 18, 2017
- Gene Silencing Series
- ENCSR509JUR , ENCSR153WDD , ENCSR366ONT , ENCSR160HHD , ENCSR143YTV , ENCSR177JPA , ENCSR496YXY , ENCSR692NVT , ENCSR651TXH , ENCSR685TOO , ENCSR747ZDR , ENCSR539CHL , ENCSR932JIP , ENCSR447WYJ , ENCSR844UQZ , ENCSR778DIB , ENCSR895MZV , ENCSR490XKT
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
---|---|---|---|---|---|
1 | 1 | Homo sapiens K562 cell line genetically modified (interference) using CRISPR | ENCBS861OYO | ENCGM404HDC | ENCLB620RBM |
2 | 1 | Homo sapiens K562 cell line genetically modified (interference) using CRISPR | ENCBS287NAE | ENCGM404HDC | ENCLB851VUS |