Experiment summary for ENCSR538ZXG
doi:10.17989/ENCSR538ZXG
Summary
- Status
- archived
- Assay
- RIP-seq
- Target
- SUZ12
- Biosample summary
- Homo sapiens K562
- Biosample Type
- cell line
- Replication type
- isogenic
- Nucleic acid type
- RNA
- Size range
- 150-150
- Fragmentation methods
- sonication (generic) [1-1]sonication (generic) [1-2]sonication (generic) [3-2]sonication (generic) [2-2]sonication (generic) [2-1]sonication (generic) [3-1]none [4-1]none [4-2]none [6-1]none [5-1]none [5-2]none [6-2]sonication (generic) [9-1]sonication (generic) [7-1]sonication (generic) [8-1]
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
ENCODE3 project
- Lab
- John Rinn, Broad
- Award
- U54HG006991 (Bradley Bernstein, Broad)
- Project
- ENCODE
- Aliases
- bradley-bernstein:Project Element 1905
- Date submitted
- July 7, 2016
- Date released
- May 4, 2016
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
---|---|---|---|---|---|
1 | 1 | Homo sapiens K562 cell line | ENCBS354VJM | ENCAB500STA | ENCLB473XRD |
1 | 2 | Homo sapiens K562 cell line | ENCBS354VJM | ENCAB696YGR | ENCLB429WUK |
3 | 2 | Homo sapiens K562 cell line | ENCBS378DFU | ENCAB696YGR | ENCLB329YEM |
2 | 2 | Homo sapiens K562 cell line | ENCBS005AIZ | ENCAB696YGR | ENCLB281FKM |
2 | 1 | Homo sapiens K562 cell line | ENCBS005AIZ | ENCAB500STA | ENCLB734QBG |
3 | 1 | Homo sapiens K562 cell line | ENCBS378DFU | ENCAB500STA | ENCLB672LKB |
4 | 1 | Homo sapiens K562 cell line | ENCBS947YKG | ENCAB392FII | ENCLB429TMF |
4 | 2 | Homo sapiens K562 cell line | ENCBS947YKG | ENCAB333HSG | ENCLB893TRF |
6 | 1 | Homo sapiens K562 cell line | ENCBS083ACT | ENCAB333HSG | ENCLB284KWN |
5 | 1 | Homo sapiens K562 cell line | ENCBS729ELF | ENCAB333HSG | ENCLB508INC |
5 | 2 | Homo sapiens K562 cell line | ENCBS729ELF | ENCAB392FII | ENCLB812KON |
6 | 2 | Homo sapiens K562 cell line | ENCBS083ACT | ENCAB392FII | ENCLB619SXY |
9 | 1 | Homo sapiens K562 cell line | ENCBS216WMI | ENCAB000BEB | ENCLB843XVI |
7 | 1 | Homo sapiens K562 cell line | ENCBS532KVA | ENCAB000BEB | ENCLB585CJG |
8 | 1 | Homo sapiens K562 cell line | ENCBS323WRW | ENCAB000BEB | ENCLB072WQB |