Experiment summary for ENCSR422XRE
doi:10.17989/ENCSR422XRE
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- cog-1
- Biosample summary
- Caenorhabditis elegans strain OP541 (unc-119(tm4063) III; wgIs541) whole organism hermaphrodite midembryo 3 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans cog-1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing COG-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:COG-1-OP541-ME
- Date submitted
- August 24, 2015
- Date released
- May 10, 2016
- Submitter comment
- ENCFF006YXV, ENCFF102UBG, ENCFF480CNJ, ENCFF343FBT were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain OP541 (unc-119(tm4063) III; wgIs541) hermaphrodite midembryo 3 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans cog-1 | ENCBS576KYX | ENCGM800VTU | ENCAB728YTO | ENCLB055XWA |
| 2 | 1 | Caenorhabditis elegans strain OP541 (unc-119(tm4063) III; wgIs541) hermaphrodite midembryo 3 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans cog-1 | ENCBS506JRB | ENCGM800VTU | ENCAB728YTO | ENCLB580RBN |