Experiment summary for ENCSR387HSD
doi:10.17989/ENCSR387HSD
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- F13C5.2
- Biosample summary
- Caenorhabditis elegans strain OP605 (unc-119(tm4063) III; wgIs605) whole organism early embryo 1 hour post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans F13C5.2
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing F13C5.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:F13C5.2-OP605-EE
- Date submitted
- October 5, 2017
- Date released
- November 6, 2017
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 3 | 1 | Caenorhabditis elegans strain OP605 (unc-119(tm4063) III; wgIs605) mixed sex early embryo 1 hour post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans F13C5.2 | ENCBS003CCQ | ENCGM128AMY | ENCAB728YTO | ENCLB966LVE |
| 2 | 1 | Caenorhabditis elegans strain OP605 (unc-119(tm4063) III; wgIs605) mixed sex early embryo 1 hour post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans F13C5.2 | ENCBS782ECF | ENCGM128AMY | ENCAB728YTO | ENCLB422UJG |