Experiment summary for ENCSR313OIT
doi:10.17989/ENCSR313OIT
Summary
- Status
- released
- Assay
- RNA-seq (total RNA-seq)
- Target
- ceh-2
- Biosample summary
- Caenorhabditis elegans strain TB200 (ceh-2(ch4) I) whole organism hermaphrodite 50 minutes post synchronization using egg bleaching genetically modified (mutagenesis) using mutagen treatment targeting C. elegans ceh-2
- Biosample Type
- whole organisms
- Replication type
- unreplicated
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- 350-600
- Extraction method
- Trizol
- Fragmentation methods
- shearing (Covaris generic)
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 2500, Illumina NextSeq 500
Attribution
modERN project
- Lab
- Robert Waterston, UW
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- Aliases
- robert-waterston:experiment_TB200_50_1
- Date submitted
- May 31, 2016
- Date released
- March 22, 2019
- Organism Development Series
- ENCSR515CPF
- Submitter comment
- Analysis of this data is in progress
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain TB200 (ceh-2(ch4) I) hermaphrodite 50 minutes post synchronization using egg bleaching whole organism genetically modified (mutagenesis) using mutagen treatment targeting C. elegans ceh-2 | ENCBS588HJB | ENCGM802EDW | ENCLB652ZJL |