Experiment summary for ENCSR297YSC
Summary
- Status
- released
- Assay
- DNase-seq
- Biosample summary
- Mus musculus C57BL/6 liver adult (8-10 weeks) treated with darkness for 58 days
- Biosample Type
- tissue
- Replication type
- unreplicated
- Description
- DNase-seq for liver of C57BL/6J mice after 58 hr of constant darkness. Satchidananda et. al. Cell, Vol. 109, 307–320, May 3, 2002.
- Treatments
- darkness for 58 day
- Nucleic acid type
- DNA
- Strand specificity
- Non-strand-specific
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- John Stamatoyannopoulos, UW
- Award
- U54HG007010 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- Date released
- January 8, 2019
- Related datasets
- ENCSR904DTN We entrained C57BL/6J mice to a 12-hour light, 12-hour dark cycle (LD12:12) under constant temperature for two weeks, and then we transferred the mice to constant darkness. Starting at 30 hr after lights off, which corresponds to circadian time 18 (CT18), tissue samples were collected from ten mice every 4 hr for two complete sources of circadian cycles. Satchidananda et. al. Cell, Vol. 109, 307–320, May 3, 2002.
Isogenic replicates
| Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | strain C57BL/6J adult (8-10 weeks) liver tissue treated with darkness for 58 days | ENCBS983HHL | ENCLB179QEF |
| 1 | 2 | strain C57BL/6J adult (8-10 weeks) liver tissue treated with darkness for 58 days | ENCBS983HHL | ENCLB592XZU |