Experiment summary for ENCSR287VPM
doi:10.17989/ENCSR287VPM
Summary
- Status
- released
- Assay
- ChIP-seq (Histone ChIP-seq)
- Target
- H3K4me3
- Biosample summary
- Homo sapiens SK-N-MC
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- ChIP-seq against H3K4me3 using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/biosample/3151999, www.ncbi.nlm.nih.gov/pubmed/25453903).
- Nucleic acid type
- DNA
- Library starting quantity
- 119.68ng [2-1]235ng [3-1]
- Size range
- 200-600
- Fragmentation methods
- sonication (generic) [2-1]none [2-2]sonication (generic) [3-1]
- Platform
- Illumina HiSeq 2500, Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Bradley Bernstein, Broad
- Award
- U54HG006991 (Bradley Bernstein, Broad)
- Project
- ENCODE
- External resources
- Aliases
- bradley-bernstein:Project Element 867
- Date submitted
- December 23, 2015
- Date released
- November 14, 2016
- Reference Epigenome
- ENCSR394KIB
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens SK-N-MC cell line | ENCBS203EZT | ENCAB582RSV | ENCLB333UZF |
| 2 | 2 | Homo sapiens SK-N-MC cell line | ENCBS203EZT | ENCAB582RSV | ENCLB263HJZ |
| 3 | 1 | Homo sapiens SK-N-MC cell line | ENCBS273LIC | ENCAB582RSV | ENCLB118XRD |