1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. smooth muscle cell

Experiment summary for ENCSR261VAS

doi:10.17989/ENCSR261VAS

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens smooth muscle cell originated from H9
Biosample Type
in vitro differentiated cells
Replication type
isogenic
Nucleic acid type
DNA
Library starting quantity
2.1ng
Size range
200-600
Fragmentation methods
sonication (generic)
Controls

Attribution

ENCODE3 project
Lab
Bradley Bernstein, Broad
Award
U54HG006991 (Bradley Bernstein, Broad)
Project
ENCODE
External resources
Aliases
bradley-bernstein:Project Element 2042
Date submitted
April 11, 2016
Date released
December 3, 2017
Reference Epigenome
ENCSR116JEF 
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
One of the replicates was much higher quality than the other.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Visit collection page for SESCCSearch for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21Homo sapiens female embryo (5 days) smooth muscle in vitro differentiated cells originated from H9ENCBS780PCJENCAB000AXXENCLB830DOQ
11Homo sapiens female embryo (5 days) smooth muscle in vitro differentiated cells originated from H9ENCBS899TTJENCAB000AXXENCLB380MYK

Files

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Output type
Replicates

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