Summary for ENCSR116JEF
doi:10.17989/ENCSR116JEF
Summary
- Status
- released
- Description
- Reference epigenome for human H9-derived smooth muscle cell
- Donor diversity
- single
- Assay
- whole-genome shotgun bisulfite sequencing, DNase-seq, polyA plus RNA-seq, small RNA-seq, ChIP-seq, RNA-seq, microRNA-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H3K36me3, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens smooth muscle cell originated from H9
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR116JEF
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR236URT | polyA plus RNA-seq | Homo sapiens smooth muscle cell originated from H9 | Barbara Wold, Caltech | released | ||
| ENCSR248CME | DNase-seq | Homo sapiens smooth muscle cell originated from H9 | John Stamatoyannopoulos, UW | archived | ||
| ENCSR261VAS | ChIP-seq | CTCF | Homo sapiens smooth muscle cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR250STJ | small RNA-seq | Homo sapiens smooth muscle cell originated from H9 | Thomas Gingeras, CSHL | released | ||
| ENCSR143RMH | ChIP-seq | H3K27me3 | Homo sapiens smooth muscle cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR651JDA | ChIP-seq | H3K36me3 | Homo sapiens smooth muscle cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR130IMV | ChIP-seq | H3K4me1 | Homo sapiens smooth muscle cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR515PKY | ChIP-seq | H3K4me3 | Homo sapiens smooth muscle cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR210ZPC | ChIP-seq | H3K27ac | Homo sapiens smooth muscle cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR090QTV | ChIP-seq | H3K9me3 | Homo sapiens smooth muscle cell originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR052FJA | RNA-seq | Homo sapiens smooth muscle cell originated from H9 | Thomas Gingeras, CSHL | released | ||
| ENCSR155LSV | microRNA-seq | Homo sapiens smooth muscle cell originated from H9 | Ali Mortazavi, UCI | released | ||
| ENCSR076OHG | whole-genome shotgun bisulfite sequencing | Homo sapiens smooth muscle cell originated from H9 | Richard Myers, HAIB | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR729MRJ | input library | Homo sapiens smooth muscle cell originated from H9 | Bradley Bernstein, Broad | released |