Experiment summary for ENCSR254YRM

doi:10.17989/ENCSR254YRM

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years)
Biosample Type
tissue
Replication type
anisogenic
Description
CTCF ChIP-seq on human liver
Nucleic acid type
DNA
Size range
150-350
Controls

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:liver-CTCF_07-729_gaiix
Date submitted
July 30, 2014
Date released
April 14, 2017
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
IMPORTANT! Bioreplicate 2 was previously annotated as liver from a 4 year old female. It has now been corrected to be liver from a 32 year old adult male.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Anisogenic replicates

Anisogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens female child (6 years) liver tissueENCBS045RNAENCAB000AXUENCLB531NQK
21Homo sapiens male adult (32 years) with nonobstructive coronary artery disease; liver tissueENCBS046RNAENCAB000AXUENCLB761UMI