Experiment summary for ENCSR200VHL
doi:10.17989/ENCSR200VHL
Supersedes ENCSR000CAD
Summary
- Status
- released
- Assay
- ChIA-PET
- Target
- CTCF
- Biosample summary
- Homo sapiens MCF-7
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- CTCF ChIA-PET in MCF7
- Nucleic acid type
- DNA
- Size range
- 300-600 [1-1]350-600 [2-1]
- Extraction method
- SDS
- Fragmentation methods
- sonication (Branson Sonifier 250)
- Size selection method
- BluePippin
- Platform
- Illumina MiSeq, Illumina HiSeq 4000
Attribution
ENCODE4 project
- Lab
- Yijun Ruan, JAX
- Award
- UM1HG009409 (Yijun Ruan, JAX)
- Project
- ENCODE
- External resources
- Aliases
- yijun-ruan:MCF7_CTCF
- Date submitted
- November 1, 2019
- Date released
- January 25, 2021
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens MCF-7 cell line | ENCBS581IOB | ENCAB635SXP | ENCLB221UOT |
| 2 | 1 | Homo sapiens MCF-7 cell line | ENCBS734CYW | ENCAB635SXP | ENCLB978GEE |