Experiment summary for ENCSR160YSN
doi:10.17989/ENCSR160YSN
Summary
- Status
- released
- Assay
- CRISPRi followed by RNA-seq (CRISPRi RNA-seq)
- Target
- HMGN3
- Biosample summary
- Homo sapiens K562 genetically modified (interference) using CRISPR targeting H. sapiens HMGN3
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on K562 cells treated by CRISPR interference targeting HMGN3.
- Nucleic acid type
- RNA
- Size range
- >200
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:E-K562-CRISPRi-HMGN3
- Date submitted
- October 31, 2017
- Date released
- January 17, 2018
- Gene Silencing Series
- ENCSR148QQW
- Submitter comment
- We release this datasets with a insufficient read depth warning as we believe it's valuable to the user community with only 122,065 reads short of the recommended read depth.
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting H. sapiens HMGN3 | ENCBS486LUF | ENCGM204IQO | ENCLB815FCS |
| 2 | 1 | Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting H. sapiens HMGN3 | ENCBS673RQY | ENCGM204IQO | ENCLB795NDL |