Experiment summary for ENCSR095PIC
doi:10.17989/ENCSR095PIC
Summary
- Status
- released
- Assay
- CRISPRi followed by RNA-seq (CRISPRi RNA-seq)
- Control type
- non-specific target
- Biosample summary
- Homo sapiens K562 genetically modified (interference) using CRISPR
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on K562 cells treated by CRISPR interference for a non-specific target (batch E control).
- Nucleic acid type
- RNA
- Size range
- >200
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 4000
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:E-K562-CRISPRi-Ctrl-tx-E
- Date submitted
- August 7, 2017
- Date released
- November 18, 2017
- Gene Silencing Series
- ENCSR148QQW , ENCSR866PAO , ENCSR177IYD , ENCSR966USM , ENCSR558TVP , ENCSR004ZBD , ENCSR250NHR , ENCSR321RPG , ENCSR387NMV , ENCSR208KNW , ENCSR939YHG , ENCSR466OEJ , ENCSR205DTM , ENCSR046XJC , ENCSR739ERW , ENCSR849RWU , ENCSR156EPV , ENCSR521VAG , ENCSR657AYP , ENCSR612JVF , ENCSR747UPR , ENCSR337LJU , ENCSR394VRH , ENCSR496MYK , ENCSR975MRK , ENCSR157JAK , ENCSR290RLW , ENCSR785ATE , ENCSR859RHV , ENCSR434ZAM , ENCSR349LHQ , ENCSR043UEE , ENCSR212QDE , ENCSR179XMY , ENCSR588MYR , ENCSR226CVP , ENCSR315EHR , ENCSR045BVL , ENCSR467RQJ , ENCSR045LNG , ENCSR658NCC , ENCSR708MPN , ENCSR199FFQ , ENCSR304VAM , ENCSR991TCB , ENCSR997FLI , ENCSR569WHC , ENCSR895NMN , ENCSR612NHI , ENCSR109KMO , ENCSR181QJF , ENCSR559VHS , ENCSR439NIR , ENCSR231XYT , ENCSR206YZX
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line genetically modified (interference) using CRISPR | ENCBS935HPR | ENCGM404HDC | ENCLB288NKH |
| 2 | 1 | Homo sapiens K562 cell line genetically modified (interference) using CRISPR | ENCBS762WHJ | ENCGM404HDC | ENCLB574XMH |