1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. SK-N-MC

Experiment summary for ENCSR152QRE

doi:10.17989/ENCSR152QRE

Summary

Status
released
Assay
ChIP-seq (Histone ChIP-seq)
Target
H3K4me1
Biosample summary
Homo sapiens SK-N-MC
Biosample Type
cell line
Replication type
isogenic
Description
ChIP-seq against H3K4me1 using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/pubmed/25453903, www.ncbi.nlm.nih.gov/biosample/3151999).
Nucleic acid type
DNA
Library starting quantity
105ng
Size range
200-600
Fragmentation methods
none [2-1]sonication (generic) [1-1]
Controls

Attribution

ENCODE3 project
Lab
Bradley Bernstein, Broad
Award
U54HG006991 (Bradley Bernstein, Broad)
Project
ENCODE
External resources
Aliases
bradley-bernstein:Project Element 828
Date submitted
April 11, 2016
Date released
November 14, 2016
Reference Epigenome
ENCSR394KIB 
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21Homo sapiens SK-N-MC cell lineENCBS734TWPENCAB000APOENCLB914AVX
11Homo sapiens SK-N-MC cell lineENCBS273LICENCAB000APSENCLB568HLM

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