Experiment summary for ENCSR130IPN

Summary

Status
released
Assay
DNase-seq
Biosample summary
Mus musculus C57BL/6 liver adult (8-10 weeks) treated with darkness for 54 days
Biosample Type
tissue
Replication type
unreplicated
Description
DNase-seq for liver of C57BL/6J mice after 54 hr of constant darkness. Satchidananda et. al. Cell, Vol. 109, 307–320, May 3, 2002.
Treatments
darkness for 54 day
Nucleic acid type
DNA
Strand specificity
Non-strand-specific

Attribution

ENCODE3 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG007010 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date submitted
September 28, 2014
Date released
January 8, 2019
Related datasets
ENCSR904DTN 
We entrained C57BL/6J mice to a 12-hour light, 12-hour dark cycle (LD12:12) under constant temperature for two weeks, and then we transferred the mice to constant darkness. Starting at 30 hr after lights off, which corresponds to circadian time 18 (CT18), tissue samples were collected from ten mice every 4 hr for two complete sources of circadian cycles. Satchidananda et. al. Cell, Vol. 109, 307–320, May 3, 2002.

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleLibrary
12strain C57BL/6J adult (8-10 weeks) liver tissue treated with darkness for 54 daysENCBS707EPHENCLB181CHE
11strain C57BL/6J adult (8-10 weeks) liver tissue treated with darkness for 54 daysENCBS707EPHENCLB289FEP