Experiment summary for ENCSR020GGM

Summary

Status
released
Assay
whole-genome shotgun bisulfite sequencing (WGBS)
Biosample summary
Mus musculus C57BL/6 forebrain postnatal (0 days)
Biosample Type
tissue
Replication type
isogenic
Description
Whole genome bisulfite-seq on postnatal 0 day mouse forebrain
Nucleic acid type
DNA
Size range
180-500
Extraction method
QIAGEN DNeasy Blood & Tissue Kit
Fragmentation methods
shearing (Covaris S2)
Size selection method
Sera-mag SpeedBeads

Attribution

ENCODE3 project
Lab
Joe Ecker, Salk
Award
U54HG006997 (Bing Ren, UCSD)
Project
ENCODE
External resources
Aliases
joe-ecker:P0_FB
Date submitted
March 5, 2014
Date released
June 30, 2014
Organism Development Series
ENCSR082AVR 
Whole genome bisulfite-seq on mouse forebrain embryonic (11.5 day - postnatal).
Reference Epigenome
ENCSR219XIH 
Reference epigenome for mouse forebrain (0 day postnatal)
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11strain B6NTac;B6NCrl/Lap mixed sex postnatal (0 days) forebrain tissueENCBS038AAAENCLB047XKP
21strain B6NTac;B6NCrl/Lap mixed sex postnatal (0 days) forebrain tissueENCBS554AAAENCLB414SVL
12strain B6NTac;B6NCrl/Lap mixed sex postnatal (0 days) forebrain tissueENCBS038AAAENCLB462LRY
22strain B6NTac;B6NCrl/Lap mixed sex postnatal (0 days) forebrain tissueENCBS554AAAENCLB399EBP