Summary for ENCSR219XIH

doi:10.17989/ENCSR219XIH

Summary

Status
released
Description
Reference epigenome for mouse forebrain (0 day postnatal)
Donor diversity
composite
Assay
whole-genome shotgun bisulfite sequencing, DNase-seq, ATAC-seq, polyA plus RNA-seq, ChIP-seq, RNA-seq, microRNA-seq
Target
H3K36me3, H3K4me3, CTCF, H3K27ac, H3K9ac, H3K27me3, H3K9me3, H3K4me1, H3K4me2
Biosample summary
B6NCrl forebrain tissue
Diseases
Not reported

Attribution

ENCODE3 project
Lab
ENCODE Consortium
Award
U41HG006992 (J. Michael Cherry, Stanford)
Project
ENCODE
External resources

Experiments in ENCSR219XIH

Experiments
16 experiments
Accession
Assay
Target
Donors
Biosample summary
Lab
Status
Cart
ENCSR723SZVRNA-seqENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Thomas Gingeras, CSHL
released
ENCSR310MLBATAC-seqENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Bing Ren, UCSD
released
ENCSR677HXCChIP-seqCTCFENCDO956IXVMus musculus strain B6NCrl forebrain tissue postnatal (0 days)Richard Myers, HAIB
released
ENCSR020GGMwhole-genome shotgun bisulfite sequencingENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Joe Ecker, Salk
released
ENCSR094TTTChIP-seqH3K27acENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Bing Ren, UCSD
released
ENCSR069TDCChIP-seqH3K36me3ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Bing Ren, UCSD
released
ENCSR070MOKChIP-seqH3K27me3ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Bing Ren, UCSD
released
ENCSR258YWWChIP-seqH3K4me3ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Bing Ren, UCSD
released
ENCSR093DWUChIP-seqH3K9me3ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Bing Ren, UCSD
released
ENCSR465PLBChIP-seqH3K4me1ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Bing Ren, UCSD
released
ENCSR906UJWChIP-seqH3K4me2ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Bing Ren, UCSD
released
ENCSR791AJYDNase-seqENCDO956IXVMus musculus strain B6NCrl forebrain tissue postnatal (0 days)John Stamatoyannopoulos, UW
released
ENCSR369RBOChIP-seqH3K9acENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Bing Ren, UCSD
released
ENCSR362AIZpolyA plus RNA-seqENCDO956IXVMus musculus strain B6NCrl forebrain tissue postnatal (0 days)Barbara Wold, Caltech
released
ENCSR683JZOmicroRNA-seqENCDO956IXVMus musculus strain B6NCrl forebrain tissue postnatal (0 days)Ali Mortazavi, UCI
released
ENCSR267CQCmicroRNA-seqENCDO956IXVMus musculus strain B6NCrl forebrain tissue postnatal (0 days)Ali Mortazavi, UCI
released
Control experiments
2 control experiments
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR264HIKinput libraryMus musculus strain B6NCrl forebrain tissue postnatal (0 days)Richard Myers, HAIB
released
ENCSR398NCKinput libraryMus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)Bing Ren, UCSD
released