Experiment summary for ENCSR000DXQ

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours
Biosample Type
cell line
Replication type
isogenic
Description
CTCF ChIP-seq on human SK-N-SH treated with 6uM retinoic acid for 48 hours
Treatments
6 μM all-trans-retinoic acid (CHEBI:15367) for 48 hours
Nucleic acid type
DNA
Lysis method
see document
Extraction method
see document
Fragmentation methods
see document
Size selection method
see document
Strand specificity
Non-strand-specific
Controls

Attribution

ENCODE2 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG004592 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date submitted
March 17, 2011
Date released
March 17, 2011
Submitter comment
Cross-correlation metrics are too poor to permit further analysis. Replicate 1,1 of this experiment was previously attributed to biosample ENCBS404ENC and replicate 2,1 of this experiment was previously attributed to biosample ENCBS404ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv4

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hoursENCBS172JMMENCAB000AFPENCLB061VDM
21SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hoursENCBS606NNZENCAB000AFPENCLB792XJD