Experiment summary for ENCSR000DXQ
doi:10.17989/ENCSR000DXQ
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CTCF
- Biosample summary
- Homo sapiens SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- CTCF ChIP-seq on human SK-N-SH treated with 6uM retinoic acid for 48 hours
- Treatments
- 6 μM all-trans-retinoic acid (CHEBI:15367) for 48 hours
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
- Platform
- Illumina Genome Analyzer II
- Controls
Attribution
ENCODE2 project
- Lab
- John Stamatoyannopoulos, UW
- Award
- U54HG004592 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- External resources
- Date submitted
- March 17, 2011
- Date released
- March 17, 2011
- Annotation (BPNet-model)
- Submitter comment
- Cross-correlation metrics are too poor to permit further analysis. Replicate 1,1 of this experiment was previously attributed to biosample ENCBS404ENC and replicate 2,1 of this experiment was previously attributed to biosample ENCBS404ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS172JMM | ENCAB000AFP | ENCLB061VDM |
| 2 | 1 | Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS606NNZ | ENCAB000AFP | ENCLB792XJD |