1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. HepG2

Experiment summary for ENCSR000AMA

doi:10.17989/ENCSR000AMA

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens HepG2
Biosample Type
cell line
Replication type
isogenic
Description
CTCF ChIP-seq on human HepG2
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Bradley Bernstein, Broad
Award
U54HG004570 (Bradley Bernstein, Broad)
Project
ENCODE
Date submitted
November 16, 2010
Date released
February 10, 2011
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
As of February 9th, 2017, the control has been changed to ENCSR055XHN, requiring new peaks and signal files.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens HepG2 cell lineENCBS295NFSENCAB000AXYENCLB695AAZ
21Homo sapiens HepG2 cell lineENCBS743JKXENCAB000AXYENCLB695ABA

Files

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Output type
Replicates

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