1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. GM12878

Experiment summary for ENCSR000AKB

doi:10.17989/ENCSR000AKB

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens GM12878
Biosample Type
cell line
Replication type
isogenic
Description
CTCF ChIP-seq on human GM12878
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Bradley Bernstein, Broad
Award
U54HG004570 (Bradley Bernstein, Broad)
Project
ENCODE
Aliases
bradley-bernstein:Project Element 132
Date submitted
November 16, 2010
Date released
February 10, 2011
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
Fastq file ENCFF000ARV specified read length was 51, but the file contains read length(s) (47, 12369078), (51, 5580377).
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens GM12878 cell lineENCBS715VCPENCAB000AXYENCLB695ADM
21Homo sapiens GM12878 cell lineENCBS830CIQENCAB000AXYENCLB695ASF

Files

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Output type
Replicates

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